New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2193765	14 (0.520)	6 (0.240)	3/196	2.3	26.1%	coding (502/831 nt)	h16_A2021	universal stress protein, UspA family
	?	AM260479	= 2193810	21 (0.840)					coding (457/831 nt)	h16_A2021	universal stress protein, UspA family

CTGGCCAGCCACGCTGTCAGCCGGTTCCCGCTGTCACGGCAGGTCTCTTCGTCAATGGCAGCCGCGCTGACCACCAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCCAGCAGCGC  >  AM260479/2193632‑2193894                                                                                                                                      |                                                                                                                                  ctggcCAGCCACGCTGTCAGCCGGTTCCCGCTGTCACGGCAGGTCTCTTCGTCAATGGCAGCCGCGCTGACCACCAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGC                                                                                                                                   >  2:1090909‑M1/1‑134 (MQ=255)             gCTGTCAGCCGGTTCCCGCTGTCACGGCAGGTCTCTTCGTCAATGGCAGCCGCGCTGACCACAAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGAcc                                                                                                                       <  2:342830/134‑1 (MQ=255)                                                            aGCCGCGCTGACCACCAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGgccggccg                                                                        <  2:1073637/134‑1 (MQ=255)                                                                      accaccAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAgcgcgggcagtagcggacgcat                                                                >  1:1090909‑M2/1‑110 (MQ=255)                                                                         accaGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAgcgcgggcagtagcggacgcattgccg                                                           >  2:543691‑M2/1‑107 (MQ=255)                                                                                      cAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCgcgct                                                                    >  2:182840/1‑111 (MQ=255)                                                                                      cAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCgcgct                                                                    <  1:182840/112‑2 (MQ=255)                                                                                              gCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCa                                        <  2:63536/132‑1 (MQ=255)                                                                                              gCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCAtt                                      <  1:874329/134‑1 (MQ=255)                                                                                                            cGGCAATGCGTCCGCTACTGCCCGCGCtttggtggtcatgtcgcgatcgcatggaacggcggtcgagaggccgcgcgggcagtagcggacgcattgccgtggctcgcgcatgccagtgctgttaccgccctggt                        >  2:543691‑M1/1‑27 (MQ=255)                                                                                                            cGGCAATGCGTCCGCTACTGCCCGCGCtttggtggtcatgtcgcgatcgcatggaacggcggtcgagaggcc                                                                                      >  1:751480‑M1/1‑27 (MQ=255)                                                                                                            cGGCAATGCGTCCGCTACTGCCCGCGCtttggtggtcatgtcgcgatcgcatggaacggcggtcgagaggcc                                                                                      <  2:21210‑M1/72‑46 (MQ=255)                                                                                                            cGGCAATGCGTCCGCTACTGCCCGCGCtttggtggtcatgtcgcgatcgcatggaacggcggtcgagaggcc                                                                                      >  1:21210‑M1/1‑27 (MQ=255)                                                                                                            cGGCAATGCGTCCGCTACTGCCCGCGCtttggtggtcatgtcgcgatcgcatggaacggcggtcgagaggcc                                                                                      <  2:751480‑M1/72‑46 (MQ=255)                                                                                                                 aTGCGTCCGCTACTGCCCGCGCtttggtggtcatgtcgcgatcgcatggaacggcggtcgagaggccgcgcgggcagtagcggacgcattgccgtggctcgcgcatgccagtgctgttaccgccctggtggt                     >  1:1090909‑M1/1‑22 (MQ=255)                                                                                                                      tCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGa                                                      <  1:777893/94‑1 (MQ=255)                                                                                                                      tCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGa                                                      >  2:777893/1‑94 (MQ=255)                                                                                                                      tCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTcc                                            >  1:842929/1‑104 (MQ=255)                                                                                                                      tCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTcc                                            <  2:842929/104‑1 (MQ=255)                                                                                                                           tACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCAtt                                      <  2:627834/105‑1 (MQ=255)                                                                                                                           tACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCAtt                                      >  1:627834/1‑105 (MQ=255)                                                                                                                             cTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCcag        >  2:95029/1‑133 (MQ=255)                                                                                                                                  cgcgcgGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCCAGCAgcgc  <  2:28936/134‑1 (MQ=255)                                                                                                                                      |                                                                                                                                  CTGGCCAGCCACGCTGTCAGCCGGTTCCCGCTGTCACGGCAGGTCTCTTCGTCAATGGCAGCCGCGCTGACCACCAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCCAGCAGCGC  >  AM260479/2193632‑2193894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.