New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2362250	16 (0.590)	4 (0.160)	3/194	2.3	22.4%	coding (468/918 nt)	h16_A2169	transcriptional regulator, LysR‑family
	?	AM260479	= 2362272	13 (0.520)					coding (446/918 nt)	h16_A2169	transcriptional regulator, LysR‑family

TAACGGCGGTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2362116‑2362250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagccgcGCGATTCCTCGCTGGTGGCCCGGCGGCTGGCGGAAATGCCGGAGGTGCTGTGCGCCAGCCCCGCATACCTGGCCGCGCATGGCAAACCGGAACACCCGTCGGAGCTGGCACAGCACATCGGCGTG  <  AM260479/2362272‑2362148                                                                                                                                                                                                                                                                      TAACGGCGGTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCG                                                                                                                                >  2:534950/1‑134     GGCGGTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCGC                                                                                                                             >  2:1052710/1‑133                                    GCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCGCGATTCCTCGCTGGTGGCCCGGCGGCTGGCcgg                                                                                             <  1:1052710/134‑4                                                                                                              GCACCTCCGGCATTTCCGCCAGCCGCGCGATTCCTCGCTGGTGGCCCGGCGG                                                                                                     >  1:645436/1‑52                                                                                                              GCACCTCCGGCATTTCCGCCAGCCGCGCGATTCCTCGCTGGTGGCCCGGCGG                                                                                                     <  2:645436/52‑1                                                                                                                               GCCAGCCGCGCGATTCCTCGCTGGTGGCCCGGCGGCTGGCGGAAATGCCGGAGGTGCTGTGCGCCAGCCCCGCATACCTGGCCGCGCATGGCAAACCGGAACACCCGTCGGAGCTGGCACAGCACATCGGCGTG  >  2:790865/1‑134                                                                                                                                                                                                                                                                      TAACGGCGGTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2362116‑2362250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagccgcGCGATTCCTCGCTGGTGGCCCGGCGGCTGGCGGAAATGCCGGAGGTGCTGTGCGCCAGCCCCGCATACCTGGCCGCGCATGGCAAACCGGAACACCCGTCGGAGCTGGCACAGCACATCGGCGTG  <  AM260479/2362272‑2362148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.