New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2362250	16 (0.590)	4 (0.160)	3/194	2.3	22.4%	coding (468/918 nt)	h16_A2169	transcriptional regulator, LysR‑family
	?	AM260479	= 2362272	13 (0.520)					coding (446/918 nt)	h16_A2169	transcriptional regulator, LysR‑family

GGCGGTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGC  >  AM260479/2362120‑2362383                                                                                                                                   |                                                                                                                                      ggcggTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCgc                                                                                                                                     >  2:1052710‑M1/1‑131 (MQ=255)  gcggTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCggg                                                                                                                                   <  1:611357/134‑1 (MQ=255)               cgcgAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAgg                                                                                                                       >  2:869090/1‑133 (MQ=255)                   agaagaATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATcg                                                                                                                  >  1:790865/1‑134 (MQ=255)                             cACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCgcggctggc                                                                                                        >  2:790865‑M2/1‑125 (MQ=255)                                gCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCgcgattcctcgctggtggcccggcggctggccgg                                                                                                     <  1:1052710‑M1/134‑35 (MQ=255)                                  cGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGgca                                                                                                   <  1:534950/134‑1 (MQ=255)                                  cGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGgca                                                                                                   <  2:207129/134‑1 (MQ=255)                                         ctgtgcCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGcacc                                                                                             <  1:869090/133‑1 (MQ=255)                                                          ggTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTcc                                                                           >  1:342350/1‑134 (MQ=255)                                                                                       tATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCgct                                              <  2:652946/134‑1 (MQ=255)                                                                                           cGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCgctgct                                           <  2:342350/133‑1 (MQ=255)                                                                                                cTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGAt                                     >  2:1051624/1‑134 (MQ=255)                                                                                                     gcACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGt                                <  1:310417/134‑1 (MQ=255)                                                                                                          gCACCTCCGGCATTTCCGCCAGCCGCgcgattcctcgctggtggcccggcgg                                                                                                             >  1:645436‑M1/1‑26 (MQ=255)                                                                                                          gCACCTCCGGCATTTCCGCCAGCCGCgcgattcctcgctggtggcccggcgg                                                                                                             <  2:645436‑M1/52‑27 (MQ=255)                                                                                                                    cATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGcc                                                                               >  2:881080/1‑72 (MQ=255)                                                                                                                    cATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGcc                                                                               <  1:881080/72‑1 (MQ=255)                                                                                                                     aTTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTc                                                    >  1:797888/1‑98 (MQ=255)                                                                                                                     aTTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTc                                                    <  2:797888/98‑1 (MQ=255)                                                                                                                        ccggccaGCCGCCGGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgctgtgcgccagccccgcatacctggccgcgcatggcaaaccggaacacccgtcggagctggcacagcacatcggc             <  1:1052710‑M2/131‑101 (MQ=255)                                                                                                                           gCCAGCCGCgcgattcctcgctggtggcccggcggctggcggaaatgccggaggtgctgtgcgccagccccgcatacctggccgcgcatggcaaaccggaacacccgtcggagctggcacagcacatcggcgtg          >  2:790865‑M1/1‑9 (MQ=255)                                                                                                                                ccgccgGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgc                                                                                       <  2:645436‑M2/52‑27 (MQ=255)                                                                                                                                ccgccgGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgc                                                                                       >  1:645436‑M2/1‑26 (MQ=255)                                                                                                                                   ccgGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGc  <  2:108827/134‑1 (MQ=255)                                                                                                                                   |                                                                                                                                      GGCGGTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGC  >  AM260479/2362120‑2362383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.