New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 236225016 (0.590)4 (0.160) 3/194 2.3 22.4% coding (468/918 nt) h16_A2169 transcriptional regulator, LysR‑family
?AM260479 = 2362272 13 (0.520)coding (446/918 nt) h16_A2169 transcriptional regulator, LysR‑family

GGCGGTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGC  >  AM260479/2362120‑2362383
                                                                                                                                  |                                                                                                                                     
ggcggTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCgc                                                                                                                                     >  2:1052710‑M1/1‑131 (MQ=255)
 gcggTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCggg                                                                                                                                   <  1:611357/134‑1 (MQ=255)
              cgcgAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAgg                                                                                                                       >  2:869090/1‑133 (MQ=255)
                  agaagaATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATcg                                                                                                                  >  1:790865/1‑134 (MQ=255)
                            cACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCgcggctggc                                                                                                        >  2:790865‑M2/1‑125 (MQ=255)
                               gCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCgcgattcctcgctggtggcccggcggctggccgg                                                                                                     <  1:1052710‑M1/134‑35 (MQ=255)
                                 cGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGgca                                                                                                   <  1:534950/134‑1 (MQ=255)
                                 cGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGgca                                                                                                   <  2:207129/134‑1 (MQ=255)
                                        ctgtgcCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGcacc                                                                                             <  1:869090/133‑1 (MQ=255)
                                                         ggTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTcc                                                                           >  1:342350/1‑134 (MQ=255)
                                                                                      tATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCgct                                              <  2:652946/134‑1 (MQ=255)
                                                                                          cGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCgctgct                                           <  2:342350/133‑1 (MQ=255)
                                                                                               cTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGAt                                     >  2:1051624/1‑134 (MQ=255)
                                                                                                    gcACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGt                                <  1:310417/134‑1 (MQ=255)
                                                                                                         gCACCTCCGGCATTTCCGCCAGCCGCgcgattcctcgctggtggcccggcgg                                                                                                             >  1:645436‑M1/1‑26 (MQ=255)
                                                                                                         gCACCTCCGGCATTTCCGCCAGCCGCgcgattcctcgctggtggcccggcgg                                                                                                             <  2:645436‑M1/52‑27 (MQ=255)
                                                                                                                   cATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGcc                                                                               >  2:881080/1‑72 (MQ=255)
                                                                                                                   cATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGcc                                                                               <  1:881080/72‑1 (MQ=255)
                                                                                                                    aTTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTc                                                    >  1:797888/1‑98 (MQ=255)
                                                                                                                    aTTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTc                                                    <  2:797888/98‑1 (MQ=255)
                                                                                                                       ccggccaGCCGCCGGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgctgtgcgccagccccgcatacctggccgcgcatggcaaaccggaacacccgtcggagctggcacagcacatcggc             <  1:1052710‑M2/131‑101 (MQ=255)
                                                                                                                          gCCAGCCGCgcgattcctcgctggtggcccggcggctggcggaaatgccggaggtgctgtgcgccagccccgcatacctggccgcgcatggcaaaccggaacacccgtcggagctggcacagcacatcggcgtg          >  2:790865‑M1/1‑9 (MQ=255)
                                                                                                                               ccgccgGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgc                                                                                       <  2:645436‑M2/52‑27 (MQ=255)
                                                                                                                               ccgccgGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgc                                                                                       >  1:645436‑M2/1‑26 (MQ=255)
                                                                                                                                  ccgGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGc  <  2:108827/134‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                     
GGCGGTCATGGTTGCGCGAGAAGAATCCCACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGC  >  AM260479/2362120‑2362383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.