New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 236225016 (0.590)4 (0.160) 3/194 2.3 22.4% coding (468/918 nt) h16_A2169 transcriptional regulator, LysR‑family
?AM260479 = 2362272 13 (0.520)coding (446/918 nt) h16_A2169 transcriptional regulator, LysR‑family

CACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGCCGATGCGCGGCAGGATGATC  >  AM260479/2362148‑2362403
                                                                                                                            |                                                                                                                                   
cACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCgcggctggc                                                                                                                            >  2:790865‑M2/1‑125 (MQ=255)
     cGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGgca                                                                                                                       <  1:534950/134‑1 (MQ=255)
     cGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGgca                                                                                                                       <  2:207129/134‑1 (MQ=255)
            ctgtgcCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGcacc                                                                                                                 <  1:869090/133‑1 (MQ=255)
                             ggTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTcc                                                                                               >  1:342350/1‑134 (MQ=255)
                                                          tATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCgct                                                                  <  2:652946/134‑1 (MQ=255)
                                                              cGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCgctgct                                                               <  2:342350/133‑1 (MQ=255)
                                                                   cTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGAt                                                         >  2:1051624/1‑134 (MQ=255)
                                                                        gcACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGt                                                    <  1:310417/134‑1 (MQ=255)
                                                                                       cATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGcc                                                                                                   >  2:881080/1‑72 (MQ=255)
                                                                                       cATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGcc                                                                                                   <  1:881080/72‑1 (MQ=255)
                                                                                        aTTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTc                                                                        >  1:797888/1‑98 (MQ=255)
                                                                                        aTTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTc                                                                        <  2:797888/98‑1 (MQ=255)
                                                                                           ccggccaGCCGCCGGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgctgtgcgccagccccgcatacctggccgcgcatggcaaaccggaacacccgtcggagctggcacagcacatcggc                                 <  1:1052710‑M2/131‑101 (MQ=255)
                                                                                                   ccgccgGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgc                                                                                                           <  2:645436‑M2/52‑27 (MQ=255)
                                                                                                   ccgccgGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgc                                                                                                           >  1:645436‑M2/1‑26 (MQ=255)
                                                                                                      ccgGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGc                      <  2:108827/134‑1 (MQ=255)
                                                                                                                           gcgcggctggcggaaatgccggaggtgctgtgcgccagccccgcatacctggccgcgcatggcaaaccggaacacccgtcggagctggcacagcacatcggcgtgggattcttctcgcgcaaccatgaccgcc  >  2:1052710‑M2/1‑2 (MQ=255)
                                                                                                                            |                                                                                                                                   
CACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGCCGATGCGCGGCAGGATGATC  >  AM260479/2362148‑2362403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.