| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 2362250 | 16 (0.590) | 4 (0.160) | 3/194 | 2.3 | 22.4% | coding (468/918 nt) | h16_A2169 | transcriptional regulator, LysR‑family |
| ? | AM260479 | = 2362272 | 13 (0.520) | coding (446/918 nt) | h16_A2169 | transcriptional regulator, LysR‑family | |||||
CACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGCCGATGCGCGGCAGGATGATC > AM260479/2362148‑2362403 | cACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCgcggctggc > 2:790865‑M2/1‑125 (MQ=255) cGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGgca < 1:534950/134‑1 (MQ=255) cGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGgca < 2:207129/134‑1 (MQ=255) ctgtgcCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGcacc < 1:869090/133‑1 (MQ=255) ggTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTcc > 1:342350/1‑134 (MQ=255) tATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCgct < 2:652946/134‑1 (MQ=255) cGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCgctgct < 2:342350/133‑1 (MQ=255) cTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGAt > 2:1051624/1‑134 (MQ=255) gcACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGt < 1:310417/134‑1 (MQ=255) cATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGcc > 2:881080/1‑72 (MQ=255) cATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGcc < 1:881080/72‑1 (MQ=255) aTTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTc > 1:797888/1‑98 (MQ=255) aTTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTc < 2:797888/98‑1 (MQ=255) ccggccaGCCGCCGGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgctgtgcgccagccccgcatacctggccgcgcatggcaaaccggaacacccgtcggagctggcacagcacatcggc < 1:1052710‑M2/131‑101 (MQ=255) ccgccgGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgc < 2:645436‑M2/52‑27 (MQ=255) ccgccgGGCCACCAGCGAGGAATCGCgcggctggcggaaatgccggaggtgc > 1:645436‑M2/1‑26 (MQ=255) ccgGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGc < 2:108827/134‑1 (MQ=255) gcgcggctggcggaaatgccggaggtgctgtgcgccagccccgcatacctggccgcgcatggcaaaccggaacacccgtcggagctggcacagcacatcggcgtgggattcttctcgcgcaaccatgaccgcc > 2:1052710‑M2/1‑2 (MQ=255) | CACGCCGATGTGCTGTGCCAGCTCCGACGGGTGTTCCGGTTTGCCATGCGCGGCCAGGTATGCGGGGCTGGCGCACAGCACCTCCGGCATTTCCGCCAGCCGCCGGGCCACCAGCGAGGAATCGCGCGGCTGGCCGGCACGCACCACGCAATCGATGCCCTCCCCGGCCAGGTCGACCAGCCGGTCGCCGCTGCTGACGATCAGGTCGATATGCGGATAGCGCTCCCGGAACTCGCCGATGCGCGGCAGGATGATC > AM260479/2362148‑2362403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |