| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 3399144 | 3400464 | 1321 | 22 [0] | [0] 22 | [leuS]–h16_A3140 | [leuS],h16_A3140 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 3399143 | NA (NA) | 21 (0.840) | 21/196 | 0.2 | NA | noncoding (2/1313 nt) | ISAE1 | insertion sequence ISAE1 |
| ? | AM260479 | 3400465 = | NA (NA) | intergenic (+32/+53) | h16_A3140/dapB | Transposase ISAE1/dihydrodipicolinate reductase | |||||
GTCTTGCATGGTCGGGACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3399006‑3399143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGGCA > AM260479/3400465‑3400596 GTCTTGCATGGTCGGGACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA < 2:655916/133‑1GTCTTGCATGGTCGGGACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA < 1:536701/133‑1 CAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGG > 2:652711/1‑132 AGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCA < 2:418181/133‑1 GGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTT > 2:940006/1‑126 GGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTT < 1:940006/126‑1 CTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGC < 1:652711/134‑1 CCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGC < 2:204255/134‑1 CATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA < 1:1063766/75‑1 CATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA > 2:1063766/1‑75 ATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTT < 2:428474/134‑1 TGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCG > 1:634319/1‑110 TGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCG < 2:634319/110‑1 GCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTC > 1:326751/1‑134 CGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCG < 1:601451/134‑1 GGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCG > 1:714928/1‑133 GCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAA > 1:120089/1‑133 CCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCC > 1:262558/1‑134 TTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTG > 2:65038/1‑134 GCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGG < 2:1010622/38‑1 GCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGG > 1:1010622/1‑38 GCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGG > 2:983679/1‑134 ATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAG > 1:770367/1‑102 ATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAG < 2:770367/102‑1 CGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCG < 2:262558/133‑1 GACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGGCA < 2:326751/134‑1 GTCTTGCATGGTCGGGACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3399006‑3399143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGGCA > AM260479/3400465‑3400596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |