| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 3399144 | 3400464 | 1321 | 22 [0] | [0] 22 | [leuS]–h16_A3140 | [leuS],h16_A3140 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 3399143 | NA (NA) | 21 (0.840) | 21/196 | 0.2 | NA | noncoding (2/1313 nt) | ISAE1 | insertion sequence ISAE1 |
| ? | AM260479 | 3400465 = | NA (NA) | intergenic (+32/+53) | h16_A3140/dapB | Transposase ISAE1/dihydrodipicolinate reductase | |||||
CAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCGTCCGGGAAGTCGACTTC > AM260479/3399030‑3399275 | cAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcgg > 2:652711‑M1/1‑114 (MQ=255) aGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggca < 2:418181‑M1/133‑21 (MQ=255) ggCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagttt > 2:940006‑M1/1‑97 (MQ=255) ggCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagttt < 1:940006‑M1/126‑30 (MQ=255) cTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgc < 1:652711‑M1/134‑43 (MQ=255) ccGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggc < 2:204255‑M1/134‑51 (MQ=255) aTCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgcctt < 2:428474‑M1/134‑56 (MQ=255) tGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcg > 1:634319‑M1/1‑59 (MQ=255) tGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcg < 2:634319‑M1/110‑52 (MQ=255) gcGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtc > 1:326751‑M1/1‑51 (MQ=255) cGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtcg < 1:601451‑M1/134‑85 (MQ=255) gggCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtcg > 1:714928‑M1/1‑49 (MQ=255) gcgcgcCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtcgaa > 1:120089‑M1/1‑47 (MQ=255) ccgcTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtcgaacaggcc > 1:262558‑M1/1‑42 (MQ=255) ttGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtcgaacaggccgttg > 2:65038‑M1/1‑38 (MQ=255) gCGTGCAATGCGAAAGAAGAcgattataaccgtggcgg < 2:1010622‑M1/38‑19 (MQ=255) gCGTGCAATGCGAAAGAAGAcgattataaccgtggcgg > 1:1010622‑M1/1‑20 (MQ=255) gCAATGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtcgaacaggccgttgggcttgtcggcgaggaaacggg > 2:983679‑M1/1‑16 (MQ=255) aTGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtcgaacag > 1:770367‑M1/1‑13 (MQ=255) aTGCGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtcgaacag < 2:770367‑M1/102‑90 (MQ=255) cGAAAGAAGAcgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtcgaacaggccgttgggcttgtcggcgaggaaacgggcggcg < 2:262558‑M1/133‑124 (MQ=255) gacgattataaccgtggcggcaggccagtttcggccctgcgcgccccgcggcgccttacttcaggcccagcacgtcctgcatgtcgaacaggccgttgggcttgtcggcgaggaaacgggcggcgcgcacggca < 2:326751‑M1/134‑133 (MQ=255) | CAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCGTCCGGGAAGTCGACTTC > AM260479/3399030‑3399275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |