New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3703449 =	19 (0.700)	7 (0.280)	7/196	1.4	27.2%	coding (417/540 nt)	h16_A3429	Hypothetical protein
	?	AM260479	3703537 =	20 (0.800)					coding (505/540 nt)	h16_A3429	Hypothetical protein

TCAGCACCGCACTGGCGCCGTAGCTGGCCAGCTTGGGCGCATGGGCGGTGGCCGTGTGCGCCGCCACCGGGACGTATCCGAGCCTGTGCCACCACGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3703549‑3703449 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcgccAGTGCGGTGCTGATGGAGCGCACGCTGGCCGACTGAGCGCTGCGCCGGCGCGAGGACGACAAAAAGCCCGCCGGCTTGCGCCAGGCGGGCTTCTTGTTCCTGCCGGGGT  >  AM260479/3703537‑3703645                                                                                                                                                                                                                    TCAGCACCGCACTGGCGCCGTAGCTGGCCAGCTTGGGCGCATGGGCGGTGGCCGTGTGCGCCGCCACCGGGACGTATCCGAGCCTGTGCCACCACGGCGCCAGTGCGGTGCTGATGGAGCGCACGCTGGCCGAC                                                                              <  2:39184/134‑1                                                           CGCCGCCACCGGGACGTATCCGAGCCTGTGCCACCACGGCGC                                                                                                                >  1:495966/1‑42                                                           CGCCGCCACCGGGACGTATCCGAGCCTGTGCCACCACGGCGC                                                                                                                <  2:495966/42‑1                                                                 CACCGGGACGTATCCGAGCCTGTGCCACCACGGCGCCAGTGCGGTGCTGATGGAGCGCACGCTGGCCGACTGAGCGCTGCGCCGGCGCGAGGACGACAAAAAGCCCGCCGGCTTGCGCCAGGCGGGCTTCTTGT              >  1:793378/1‑134                                                                             TCCGAGCCTGTGCCACCACGGCGCCAGTGCGGTGCTGATGGAGCGCACGCTGGCCGACTGAGCGCTGCGCCGGCGCGAGGACGACAAAAAGCCCGCCGGCTTGCGCCAGGCGGGCTTCTTGTTCCTGCCGGGGT  <  2:793378/134‑1                                                                                 AGCCTGTGCCACCACGGCGCCAGTGCGGTGCTGATGGAG                                                                                             <  1:845219/39‑1                                                                                 AGCCTGTGCCACCACGGCGCCAGTGCGGTGCTGATGGAG                                                                                             >  2:845219/1‑39                                                                                           ACCACGGCGCCAGTGCGGTGCTGATGGAGCGCACGCTGGCCGACTGAGCGCTGCGCCGGCGCGAGGACGA                                                    <  1:1019093/70‑1                                                                                           ACCACGGCGCCAGTGCGGTGCTGATGGAGCGCACGCTGGCCGACTGAGCGCTGCGCCGGCGCGAGGACGA                                                    >  2:1019093/1‑70                                                                                                     CAGTGCGGTGCTGATGGAGCGCACGCTGGCCGACTGAGCGCTGCGCCGG                                                               <  1:54651/49‑1                                                                                                     CAGTGCGGTGCTGATGGAGCGCACGCTGGCCGACTGAGCGCTGCGCCGG                                                               >  2:54651/1‑49                                                                                                                                                                                                                    TCAGCACCGCACTGGCGCCGTAGCTGGCCAGCTTGGGCGCATGGGCGGTGGCCGTGTGCGCCGCCACCGGGACGTATCCGAGCCTGTGCCACCACGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3703549‑3703449 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcgccAGTGCGGTGCTGATGGAGCGCACGCTGGCCGACTGAGCGCTGCGCCGGCGCGAGGACGACAAAAAGCCCGCCGGCTTGCGCCAGGCGGGCTTCTTGTTCCTGCCGGGGT  >  AM260479/3703537‑3703645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.