| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 3703449 = | 19 (0.700) | 7 (0.280) | 7/196 | 1.4 | 27.2% | coding (417/540 nt) | h16_A3429 | Hypothetical protein |
| ? | AM260479 | 3703537 = | 20 (0.800) | coding (505/540 nt) | h16_A3429 | Hypothetical protein | |||||
CGACATGGCGGTGGCGCCCGCCGGACGCGGCGCCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCGCCCATGCGCCCAAGCTGGCCAGCTACGGCGCCAGTGCGGTGCTGATGGAGCGCACGC > AM260479/3703326‑3703561 | cGACATGGCGGTGGCGCCCGCCGGACGCGGCGCCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCgtggt > 2:662661/1‑134 (MQ=255) gCGGTGGCGCCCGCCGGACGCGGCGCCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGcaca < 1:662661/133‑1 (MQ=255) gcccgccGGACGCGGCGCCGGCCTGGCGCCGCGCCTGTACGCCGCGGCCGCCTGTGCCGCGGCGTACAGGCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAgg > 1:112173/1‑134 (MQ=21) ccgccgGACGCGGCGCCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGcac > 1:474844/1‑122 (MQ=255) ccgccgGACGCGGCGCCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGcac < 2:474844/122‑1 (MQ=255) ccgccgGACGCGGCGCCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATAc > 1:1035656/1‑134 (MQ=255) ccgccgGACGCGGCGCCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATAc > 2:655565/1‑134 (MQ=255) ccgccgGACGCGGCGCCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATAc > 2:543389/1‑134 (MQ=255) accccggcaggaacaagaagcccgcctggcgcaagccggcgggctttttgtcgtcctcgcgccggcgcagcgctcagtcggccagcgtgcgctccatcagcaccgcactGGCGCCGTGGTGGCACAGGCTCGGa < 2:793378‑M1/25‑1 (MQ=255) ggcgCCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTggc < 2:732915/134‑1 (MQ=255) cgcCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTggcgg < 1:543389/134‑1 (MQ=255) cGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGgcgc < 1:175377/134‑1 (MQ=255) acaagaagcccgcctggcgcaagccggcgggctttttgtcgtcctcgcgccggcgcagcgctcagtcggccagcgtgcgctccatcagcaccgcactGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTg > 1:793378‑M1/98‑134 (MQ=255) gcgccTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCg < 1:655565/134‑1 (MQ=255) gC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCGCCCATGCGCCCAAGCt > 1:28147/1‑134 (MQ=255) tcgtcctcgcgccggcgcagcgctcagtcggccagcgtgcgctccatcagcaccgcactGGCGCCgtggt > 2:1019093‑M1/60‑70 (MQ=255) tcgtcctcgcgccggcgcagcgctcagtcggccagcgtgcgctccatcagcaccgcactGGCGCCgtggt < 1:1019093‑M1/11‑1 (MQ=255) ccggcgcagcgctcagtcggccagcgtgcgctccatcagcaccgcactg < 1:54651‑M1/1‑1 (MQ=255) ccggcgcagcgctcagtcggccagcgtgcgctccatcagcaccgcactg > 2:54651‑M1/49‑49 (MQ=255) cgcgGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCGCCCATGCGCCCAAGCTGGCCAGCTACGGCGCCa < 2:35301/134‑1 (MQ=255) cggcggGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCGCCCATGCGCCCAAGCTGGCCAGCTACGGCGCCAGt < 2:205946/134‑1 (MQ=255) cggcggGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCGCCCATGCGCCCAAGCTGGCCAGCTACGGCGCCAGt < 2:28147/134‑1 (MQ=255) gcggGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCGCCCATGCGCCCAAGCTGGCCAGCTACGGCGCCAGTGc < 2:1035656/134‑1 (MQ=255) gcggGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCGCCCATGCGCCCAAGCTGGCCAGCTACGGCGCCAGTGc < 2:112173/134‑1 (MQ=255) gtcggccagcgtgcgctccatcagcaccgcactGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCGCCCATGCGCCCAAGCTGGCCAGCTACGGCGCCAGTGCGGTGCTGa < 2:39184‑M1/101‑1 (MQ=255) gCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCGCCCATGCGCCCAAGCTGGCCAGCTACGGCGCCAGTGCGGTGCTGATGGAGCGCACGc < 2:1094629/134‑1 (MQ=255) ctccatcagcaccgcactGGCGCCGTGGTGGCACAGGCt < 1:845219‑M1/21‑1 (MQ=255) ctccatcagcaccgcactGGCGCCGTGGTGGCACAGGCt > 2:845219‑M1/19‑39 (MQ=255) | CGACATGGCGGTGGCGCCCGCCGGACGCGGCGCCGGCCTGGCGCCGCGCCTGTACGCCGCGGC‑‑ACAG‑GCGGCCGCG‑‑C‑‑GCGCGGCGGGGCTGCGGCGTTCGCGGCTGATCGCGGTGCAGTCGGCGGCGCCGTGGTGGCACAGGCTCGGATACGTCCCGGTGGCGGCGCACACGGCCACCGCCCATGCGCCCAAGCTGGCCAGCTACGGCGCCAGTGCGGTGCTGATGGAGCGCACGC > AM260479/3703326‑3703561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |