Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AM260480 2,912,452 Δ39 bp intergenic (+243/–) h16_B2579 → /  cold shock protein, DNA‑binding/–

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AM260480 2912452 2912490 39 19 [0] [0] NA h16_B2579/– cold shock protein, DNA‑binding/–

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 1 =0 (0.000)14 (0.780) 11/134 0.4 100% intergenic (–/‑1344) –/pA2 –/replication initiation protein RepA
?AM260480 = 2912451 0 (0.000)intergenic (+242/–) h16_B2579/– cold shock protein, DNA‑binding/–

TTGGGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/171‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcacgggccgtgcctgacctcgtgcggtgcagcaggcGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCG  <  AM260480/2912451‑2912344
                                                                                                                                                                                                                                                                                        
TTGGGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGG                                                                                                                                                    <  1:980935/133‑1
TTGGGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGG                                                                                                                                                    <  1:1091092/133‑1
   GGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCA                                                                                                                                                <  1:465732/134‑1
   GGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCA                                                                                                                                                <  1:439420/134‑1
     CGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACG                                                                                                                                              <  1:28420/134‑1
                     TGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCT                                                                                                                                    <  1:728960/128‑1
                     TGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCT                                                                                                                                    >  2:728960/1‑128
                       CCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCG                                                                                                                                         >  1:93909/1‑121
                       CCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCG                                                                                                                                         <  2:93909/121‑1
                       CCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACG                                                                                                                                              >  1:700362/1‑116
                       CCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACG                                                                                                                                              <  2:700362/116‑1
                        CAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTG                                                                                                                           >  2:10497/1‑134
                                  CTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGC                                                                                                                  <  2:1010998/133‑1
                                      AAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCGGCAGGCG                                                                                                             >  2:1107760/1‑134
                                                   CCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCAC                                                                                                                                               <  1:157212/87‑1
                                                   CCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCAC                                                                                                                                               >  2:157212/1‑87
                                                       AGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGG                                                                                            <  1:757644/134‑1
                                                        GGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTG                                                                                                                                       <  1:323230/90‑1
                                                        GGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTG                                                                                                                                       >  2:323230/1‑90
                                                         GGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCGGCAGGCGTACCCGATTCTGCGTGGAG                                                                                          <  1:1107760/134‑1
                                                                 TGTTTCTGCGTACCCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG                                                                                                             <  1:181302/108‑1
                                                                 TGTTTCTGCGTACCCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG                                                                                                             >  2:181302/1‑108
                                                                       TGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATG                                                                            >  1:508514/1‑134
                                                                                     CCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAG                                                               <  1:10497/134‑1
                                                                                                        CCAGGACAGACGGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGT                                                                                                                            >  2:961713/1‑54
                                                                                                        CCAGGACAGACGGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGT                                                                                                                            <  1:961713/54‑1
                                                                                                                     TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGG                                            <  2:601621/121‑1
                                                                                                                     TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGG                                            >  1:601621/1‑121
                                                                                                                     TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGG                                                                           <  2:1056784/90‑1
                                                                                                                     TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGG                                                                           >  1:1056784/1‑90
                                                                                                                     TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAG                                                                                          <  2:193634/75‑1
                                                                                                                     TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAG                                                                                          >  1:193634/1‑75
                                                                                                                     TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGT                                                                                                                       >  2:1015918/1‑46
                                                                                                                     TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGT                                                                                                                       <  1:1015918/46‑1
                                                                                                                          ATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGG                          >  1:946589/1‑134
                                                                                                                                     GCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGC                               >  1:714538/1‑118
                                                                                                                                     GCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGC                               <  2:714538/118‑1
                                                                                                                                                   CCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCG  >  2:359906/1‑133
                                                                                                                                                                      GCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGG           >  1:825591/1‑105
                                                                                                                                                                      GCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGG           <  2:825591/105‑1
                                                                                                                                                                                                                                                                                        
TTGGGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/171‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcacgggccgtgcctgacctcgtgcggtgcagcaggcGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCG  <  AM260480/2912451‑2912344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.