| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 19 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1 = | 0 (0.000) | 14 (0.780) | 11/134 | 0.4 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
| ? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– | |||||
TTGGGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/171‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcacgggccgtgcctgacctcgtgcggtgcagcaggcGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCG < AM260480/2912451‑2912344 TTGGGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGG < 1:980935/133‑1TTGGGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGG < 1:1091092/133‑1 GGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCA < 1:465732/134‑1 GGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCA < 1:439420/134‑1 CGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACG < 1:28420/134‑1 TGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCT < 1:728960/128‑1 TGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCT > 2:728960/1‑128 CCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCG > 1:93909/1‑121 CCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCG < 2:93909/121‑1 CCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACG > 1:700362/1‑116 CCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACG < 2:700362/116‑1 CAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTG > 2:10497/1‑134 CTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGC < 2:1010998/133‑1 AAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCGGCAGGCG > 2:1107760/1‑134 CCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCAC < 1:157212/87‑1 CCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCAC > 2:157212/1‑87 AGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGG < 1:757644/134‑1 GGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTG < 1:323230/90‑1 GGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTG > 2:323230/1‑90 GGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCGGCAGGCGTACCCGATTCTGCGTGGAG < 1:1107760/134‑1 TGTTTCTGCGTACCCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG < 1:181302/108‑1 TGTTTCTGCGTACCCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG > 2:181302/1‑108 TGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATG > 1:508514/1‑134 CCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAG < 1:10497/134‑1 CCAGGACAGACGGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGT > 2:961713/1‑54 CCAGGACAGACGGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGT < 1:961713/54‑1 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGG < 2:601621/121‑1 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGG > 1:601621/1‑121 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGG < 2:1056784/90‑1 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGG > 1:1056784/1‑90 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAG < 2:193634/75‑1 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAG > 1:193634/1‑75 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGT > 2:1015918/1‑46 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGT < 1:1015918/46‑1 ATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGG > 1:946589/1‑134 GCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGC > 1:714538/1‑118 GCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGC < 2:714538/118‑1 CCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCG > 2:359906/1‑133 GCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGG > 1:825591/1‑105 GCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGG < 2:825591/105‑1 TTGGGCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTA‑CCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/171‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcacgggccgtgcctgacctcgtgcggtgcagcaggcGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCG < AM260480/2912451‑2912344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |