| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 19 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1 = | 0 (0.000) | 14 (0.780) | 11/134 | 0.4 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
| ? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– | |||||
CGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGC > AM260480/2912344‑2912490 | cgctccAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcagg > 2:359906‑M2/1‑108 (MQ=255) ccccGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgc > 1:825591‑M2/1‑99 (MQ=255) ccccGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgc < 2:825591‑M2/105‑7 (MQ=255) ccgccgccAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaat > 1:946589‑M2/1‑84 (MQ=255) gccAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagc > 1:714538‑M2/1‑79 (MQ=255) gccAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagc < 2:714538‑M2/118‑40 (MQ=255) ccTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta > 1:601621‑M2/1‑66 (MQ=255) ccTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta < 2:601621‑M2/121‑56 (MQ=255) cTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctggg < 1:10497‑M2/134‑88 (MQ=255) ccATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta < 2:1056784‑M2/90‑56 (MQ=255) ccATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta > 1:1056784‑M2/1‑35 (MQ=255) cATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgca > 1:508514‑M2/1‑34 (MQ=255) cTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta > 1:193634‑M2/1‑20 (MQ=255) cTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta < 2:193634‑M2/75‑56 (MQ=255) cTCCACGCAGAATCGGGTACgcctgccgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaacaggtacgcc < 1:1107760‑M2/134‑115 (MQ=255) ccACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaacaggtacgccct < 1:757644‑M2/134‑117 (MQ=255) cgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcggggtacgcagaaaca < 1:181302‑M2/108‑108 (MQ=255) cgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcggggtacgcagaaaca > 2:181302‑M2/1‑1 (MQ=255) cgcctgccgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaacaggtacgccctgcggcactttggtcttt > 2:1107760‑M2/1‑1 (MQ=255) | CGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGC > AM260480/2912344‑2912490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |