| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 19 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1 = | 0 (0.000) | 14 (0.780) | 11/134 | 0.4 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
| ? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– | |||||
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGG‑TACGCAGAAACAGGTACGCCCTGCGGCACTTTGGTCTTT > AM260480/1‑133 | cgctccagcccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAgg > 2:359906‑M1/109‑133 (MQ=255) ccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCctgc > 1:825591‑M1/100‑105 (MQ=255) ccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCctgc < 2:825591‑M1/6‑1 (MQ=255) ccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAAt > 1:946589‑M1/85‑134 (MQ=255) gccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGc > 1:714538‑M1/80‑118 (MQ=255) gccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGc < 2:714538‑M1/39‑1 (MQ=255) cctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa > 1:601621‑M1/67‑121 (MQ=255) cctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa < 2:601621‑M1/55‑1 (MQ=255) ctttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTggg < 1:10497‑M1/87‑1 (MQ=255) ccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa < 2:1056784‑M1/55‑1 (MQ=255) ccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa > 1:1056784‑M1/36‑90 (MQ=255) catccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGG‑TACGCa > 1:508514‑M1/35‑134 (MQ=255) ctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa > 1:193634‑M1/21‑75 (MQ=255) ctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa < 2:193634‑M1/55‑1 (MQ=255) ctccacgcagaatcgggtacGCCTGCCGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGG‑TACGCAGAAACAGGTACGcc < 1:1107760‑M1/114‑1 (MQ=255) ccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGG‑TACGCAGAAACAGGTACGCCCt < 1:757644‑M1/116‑1 (MQ=255) cGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGGTACGCAGAAACa < 1:181302‑M1/107‑1 (MQ=255) cGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGGTACGCAGAAACa > 2:181302‑M1/2‑108 (MQ=255) cGCCTGCCGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGG‑TACGCAGAAACAGGTACGCCCTGCGGCACTTTGGTCttt > 2:1107760‑M1/2‑134 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGG‑TACGCAGAAACAGGTACGCCCTGCGGCACTTTGGTCTTT > AM260480/1‑133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |