| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | = 2876814 | 10 (0.350) | 4 (0.150) +GACCGGCTA |
4/194 | 2.1 | 28.4% | coding (455/501 nt) | ogt | Methylated‑DNA‑[protein]‑cysteine S‑methyltransferase |
| ? | AM260480 | 2876848 = | 12 (0.420) | coding (421/501 nt) | ogt | Methylated‑DNA‑[protein]‑cysteine S‑methyltransferase | |||||
GGCGCGGCATGGCAGCGCGGCCAGCGCCATCAGCCGGGCGTGGTGCCGACGCCTTCGCGCTGCAGCAAGGCGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260480/2876739‑2876814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGGCGCTGCCCAGCACGCGATGGCAG > AM260480/2876848‑2876876 ||||||||| GGCGCGGCATGGCAGCGCGGCCAGCGCCATCAGCCGGGCGTGGTGCCGACGCCTTCGCGCTGCAGCAAGGCGCGCTGACCGGCTACGCCGGCGCTGCCCAGCACGCGATGGC < 1:1089187/112‑1GGCGCGGCATGGCAGCGCGGCCAGCGCCATCAGCCGGGCGTGGTGCCGACGCCTTCGCGCTGCAGCAAGGCGCGCTGACCGGCTACGCCGGCGCTGCCCAGCACGCGATGGC > 2:1089187/1‑112 CGTGGTGCCGACGCCTTCGCGCTGCAGCAAGGCGCGCTGACCGGCTACGCCGGCGCTGCCCAGCACGCGATGGCAG < 1:554969/76‑1 CGTGGTGCCGACGCCTTCGCGCTGCAGCAAGGCGCGCTGACCGGCTACGCCGGCGCTGCCCAGCACGCGATGGCAG > 2:554969/1‑76 ||||||||| GGCGCGGCATGGCAGCGCGGCCAGCGCCATCAGCCGGGCGTGGTGCCGACGCCTTCGCGCTGCAGCAAGGCGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260480/2876739‑2876814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGGCGCTGCCCAGCACGCGATGGCAG > AM260480/2876848‑2876876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |