New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 67591124 (0.880)7 (0.300) 7/184 1.3 26.0% coding (186/705 nt) h16_A0635 Uracil‑DNA glycosylase
?AM260479 = 675897 19 (0.810)coding (200/705 nt) h16_A0635 Uracil‑DNA glycosylase

CCCCGCGCTGGCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCACGGCGCGCTGTGCTGCTGTCGG  >  AM260479/675782‑676032
                                                                                                                                 |                                                                                                                         
ccccGCGCTGGCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCa                                                                                                                       <  2:20399/134‑1 (MQ=255)
         ggCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTggg                                                                                                              >  1:461659/1‑134 (MQ=255)
          gCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTTGGt                                                                                                             <  1:820547/134‑1 (MQ=255)
                        cAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCcac                                                                                                >  2:908059/1‑133 (MQ=255)
                            aggTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGcccatgcgcgcatcatgctggttggcgagcaa                                                                                           <  2:62957‑M1/134‑33 (MQ=255)
                             ggTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACggg                                                                                          <  2:211828/134‑1 (MQ=255)
                                    ggccgggccgACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGcc                                                                                   >  2:195338/1‑134 (MQ=255)
                                     gccgggccgACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCg                                                                                  >  1:999152/1‑134 (MQ=255)
                                             gacgaAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGccca                                                                                                                       <  2:631209‑M1/89‑5 (MQ=255)
                                             gacgaAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGccca                                                                                                                       >  1:631209‑M1/1‑85 (MQ=255)
                                               cgaAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGcccatgcgcgcatcatgctggt                                                                                                     <  1:728399‑M1/105‑23 (MQ=255)
                                                     gggAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGgttcagttca                                                                  <  2:999152/134‑1 (MQ=255)
                                                              gCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCt                                                          >  2:286514/1‑133 (MQ=255)
                                                               cAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGa                                                        <  1:195338/134‑1 (MQ=255)
                                                                 ggTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACg                                                      <  2:467948/134‑1 (MQ=255)
                                                                             cccccGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCtg                                          >  2:557227/1‑134 (MQ=255)
                                                                             cccccGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCtg                                          >  1:221931/1‑134 (MQ=255)
                                                                                ccGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGc                                       >  1:866277/1‑134 (MQ=255)
                                                                                 cGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCt                                      >  1:866959/1‑134 (MQ=255)
                                                                                           ccAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATggg                            >  1:886312/1‑134 (MQ=255)
                                                                                             aaCCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATggggg                          <  2:866277/134‑1 (MQ=255)
                                                                                              aCCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaagacctgcagggctcccccttcg                                                      <  2:728399‑M1/105‑70 (MQ=255)
                                                                                                cAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCAc                       <  1:908059/134‑1 (MQ=255)
                                                                                                                tGGGCGGCGCCGGCGCCGcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaaga                                                                          >  1:214349‑M1/1‑18 (MQ=255)
                                                                                                                tGGGCGGCGCCGGCGCCGcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaaga                                                                          <  2:214349‑M1/67‑50 (MQ=255)
                                                                                                                tGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCACGGCGCGCTGTgctgct       >  2:19170/1‑134 (MQ=255)
                                                                                                                     ggcgccggcgccGcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaagacctgcagggctcccccttcgtcggcccggccgggcacctcctggacgaagcactggcc                >  2:164758‑M1/1‑13 (MQ=255)
                                                                                                                     ggcgccggcgccGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCACGGCGCGCTGTGCTGCTGTCgg  >  2:141784/1‑134 (MQ=255)
                                                                                                                      gcgccggcgccgGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCg                                                                                  <  1:943218/53‑1 (MQ=255)
                                                                                                                      gcgccggcgccgGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCg                                                                                  >  2:943218/1‑53 (MQ=255)
                                                                                                                           ggcgccggGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCACgg                     <  2:136898/109‑1 (MQ=255)
                                                                                                                           ggcgccggGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCACgg                     >  1:136898/1‑109 (MQ=255)
                                                                                                                                 |                                                                                                                         
CCCCGCGCTGGCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCACGGCGCGCTGTGCTGCTGTCGG  >  AM260479/675782‑676032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.