New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 67591124 (0.880)7 (0.300) 7/184 1.3 26.0% coding (186/705 nt) h16_A0635 Uracil‑DNA glycosylase
?AM260479 = 675897 19 (0.810)coding (200/705 nt) h16_A0635 Uracil‑DNA glycosylase

GTCGCGGTCCAGCCCCGCGCTGGCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCACGGCGCGCTGTGCTGCT  >  AM260479/675770‑676027
                                                                                                                               |                                                                                                                                  
gTCGCGGTCCAGCCCCGCGCTGGCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGC                                                                                                                              >  1:62957‑M1/1‑134 (MQ=255)
            ccccGCGCTGGCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCa                                                                                                                  <  2:20399/134‑1 (MQ=255)
                     ggCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGcggcgccggcgcc                                                                                                                       >  2:164758‑M2/1‑107 (MQ=255)
                     ggCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTggg                                                                                                         >  1:461659/1‑134 (MQ=255)
                     ggCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCC                                                                                                                       >  1:164758‑M1/1‑120 (MQ=255)
                      gCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTTGGt                                                                                                        <  1:820547/134‑1 (MQ=255)
                                    cAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCcac                                                                                           >  2:908059/1‑133 (MQ=255)
                                        aggTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGcccatgcgcgcatcatgctggttggcgagcaa                                                                                      <  2:62957‑M1/134‑33 (MQ=255)
                                         ggTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACggg                                                                                     <  2:211828/134‑1 (MQ=255)
                                                ggccgggccgACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGcc                                                                              >  2:195338/1‑134 (MQ=255)
                                                 gccgggccgACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCg                                                                             >  1:999152/1‑134 (MQ=255)
                                                         gacgaAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGccca                                                                                                                  >  1:631209‑M1/1‑85 (MQ=255)
                                                         gacgaAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGccca                                                                                                                  <  2:631209‑M1/89‑5 (MQ=255)
                                                           cgaAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGcggcgccggcgccgcccatgcgcgcatcatgctggt                                                                                                <  2:728399‑M2/105‑37 (MQ=255)
                                                           cgaAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGcccatgcgcgcatcatgctggt                                                                                                <  1:728399‑M1/105‑23 (MQ=255)
                                                                 gggAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGgttcagttca                                                             <  2:999152/134‑1 (MQ=255)
                                                                          gCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCt                                                     >  2:286514/1‑133 (MQ=255)
                                                                           cAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGa                                                   <  1:195338/134‑1 (MQ=255)
                                                                             ggTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACg                                                 <  2:467948/134‑1 (MQ=255)
                                                                               tCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGcggcgccggcgccgccca                                                                                                                  >  1:214349‑M2/1‑49 (MQ=255)
                                                                               tCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGcggcgccggcgccgccca                                                                                                                  <  2:214349‑M2/67‑19 (MQ=255)
                                                                                         cccccGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCtg                                     >  2:557227/1‑134 (MQ=255)
                                                                                         cccccGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCtg                                     >  1:221931/1‑134 (MQ=255)
                                                                                            ccGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGc                                  >  1:866277/1‑134 (MQ=255)
                                                                                             cGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCt                                 >  1:866959/1‑134 (MQ=255)
                                                                                                ttGCTCGCCAACCAGCATGATGCGCGCATGGGcggcgccggcgccgcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaagacctgcagggctcccccttcgtcggcccggccgggcacct                              <  2:62957‑M2/134‑103 (MQ=255)
                                                                                                       ccAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATggg                       >  1:886312/1‑134 (MQ=255)
                                                                                                         aaCCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATggggg                     <  2:866277/134‑1 (MQ=255)
                                                                                                          aCCAGCATGATGCGCGCATGGGcggcgccggcgccgcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaagacctgcagggctcccccttcg                                                 <  1:728399‑M2/105‑84 (MQ=255)
                                                                                                          aCCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaagacctgcagggctcccccttcg                                                 <  2:728399‑M1/105‑70 (MQ=255)
                                                                                                            cAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCAc                  <  1:908059/134‑1 (MQ=255)
                                                                                                                            tGGGcggcgccggcgccgcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaagacctgcagggctcccccttcgtc                                               <  2:631209‑M2/89‑86 (MQ=255)
                                                                                                                            tGGGcggcgccggcgccgcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaagacctgcagggctcccccttcgtc                                               >  1:631209‑M2/1‑4 (MQ=255)
                                                                                                                            tGGGCGGCGCCGGCGCCGcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaaga                                                                     <  2:214349‑M1/67‑50 (MQ=255)
                                                                                                                            tGGGCGGCGCCGGCGCCGcccatgcgcgcatcatgctggttggcgagcaaccgggggcgcaggaaga                                                                     >  1:214349‑M1/1‑18 (MQ=255)
                                                                                                                            tGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCACGGCGCGCTGTgctgct  >  2:19170/1‑134 (MQ=255)
                                                                                                                               |                                                                                                                                  
GTCGCGGTCCAGCCCCGCGCTGGCCAGTGCTTCGTCCAGGAGGTGCCCGGCCGGGCCGACGAAGGGGGAGCCCTGCAGGTCTTCCTGCGCCCCCGGTTGCTCGCCAACCAGCATGATGCGCGCATGGGCGGCGCCGGCGCCGGGCACGCCCTGGGTGGCATTGCGCCACAACGGGCAACGCCGGCATTGGTTCAGTTCATCGCGGCTGACGGGCAGCTTCCTGTGCTCGGGCATGGGGGCACGGCGCGCTGTGCTGCT  >  AM260479/675770‑676027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.