New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AM260479 | 2605709 = | 12 (0.440) | 3 (0.130) | 3/180 | 2.2 | 22.9% | coding (594/2868 nt) | addB | two domain protein: Inactivated superfamily I helicase and RecB family exonuclease |
? | AM260479 | 2605725 = | 10 (0.430) | coding (578/2868 nt) | addB | two domain protein: Inactivated superfamily I helicase and RecB family exonuclease |
CATAGCCGACCTGCAGCACCGGCACCAGCTCGGCGGCATCGCGCAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGC > AM260479/2605582‑2605833 | gcgccggcctgctgcagggcgcgctggaacggacctattcgcatctgtccgagcgcttcctcggcgaagaggcgcgcatcgtgctggcattctggcaggcgctgtccggcccggacgatccgctgccggcgcgg > 2:418395‑M1/128‑134 (MQ=255) gcagcaCCGGCACCAGCTCGGCGGCATCGCGCAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCgg > 1:962461/1‑133 (MQ=255) gcAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAg > 1:999141/1‑106 (MQ=255) gcAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAg < 2:999141/106‑1 (MQ=255) tcgtgctggcattctggcaggcgctgtccggcccggacgatccgctgccGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCg > 2:220584‑M1/50‑86 (MQ=255) aTCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAgcg > 1:923262/1‑134 (MQ=255) gATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCg > 1:923597/1‑133 (MQ=255) ccGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGgcgccg > 1:976820/1‑46 (MQ=255) ccGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGgcgccg < 2:976820/46‑1 (MQ=255) ccGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCt < 1:262145/126‑1 (MQ=255) ccGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCt > 2:262145/1‑126 (MQ=255) ggCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGc < 1:1056577/134‑1 (MQ=255) ccGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAgcgc > 1:173551/1‑74 (MQ=255) ccGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAgcgc < 2:173551/74‑1 (MQ=255) cggcccggacgatccgctgccGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGa > 1:220584‑M1/22‑86 (MQ=255) tccgctgccGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCCgcgcgc < 1:39232‑M1/125‑1 (MQ=255) | CATAGCCGACCTGCAGCACCGGCACCAGCTCGGCGGCATCGCGCAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGC > AM260479/2605582‑2605833 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |