New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2605709 =	12 (0.440)	3 (0.130)	3/180	2.2	22.9%	coding (594/2868 nt)	addB	two domain protein: Inactivated superfamily I helicase and RecB family exonuclease
	?	AM260479	2605725 =	10 (0.430)					coding (578/2868 nt)	addB	two domain protein: Inactivated superfamily I helicase and RecB family exonuclease

GCAGCACCGGCACCAGCTCGGCGGCATCGCGCAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGCCCTGCAGCAGGCCGGCGCGATCG  >  AM260479/2605594‑2605856                                                                                                                                    |                                                                                                                                    gcagcaCCGGCACCAGCTCGGCGGCATCGCGCAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCgg                                                                                                                                    >  1:962461/1‑133 (MQ=255)       gcgcgcgggaacggacctattcgcatctgtccgagcgcttcctcggcgaagaggcgcgcatcgtgctggcattctggcaggcgctgtccggcccggacgatccgctgccggcgcggcgccgcgccGGCAGCGGa                                                                                                                             <  1:39232‑M2/9‑1 (MQ=255)                               gcAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAg                                                                                                                                 <  2:999141/106‑1 (MQ=255)                               gcAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAg                                                                                                                                 >  1:999141/1‑106 (MQ=255)                                                                   tcgtgctggcattctggcaggcgctgtccggcccggacgatccgctgccggcgcggcgccgcgccGGCAGCGGATCGTCCGGGCCg                                                                                                                 >  1:220584‑M2/66‑86 (MQ=255)                                                                   tcgtgctggcattctggcaggcgctgtccggcccggacgatccgctgccGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCg                                                                                                                 >  2:220584‑M1/50‑86 (MQ=255)                                                                        aTCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAgcg                                                            >  1:923262/1‑134 (MQ=255)                                                                             gATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCg                                                        >  1:923597/1‑133 (MQ=255)                                                                                  ccGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCt                                                          <  1:262145/126‑1 (MQ=255)                                                                                  ccGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCt                                                          >  2:262145/1‑126 (MQ=255)                                                                                     ggCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGc                                               <  1:1056577/134‑1 (MQ=255)                                                                                       ccGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAgcgc                                                                                                         <  2:173551/74‑1 (MQ=255)                                                                                       ccGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAgcgc                                                                                                         >  1:173551/1‑74 (MQ=255)                                                                                               cggcccggacgatccgctgccggcgcggcgccgcgccGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGa                                                                                     >  2:220584‑M2/38‑86 (MQ=255)                                                                                               cggcccggacgatccgctgccGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGa                                                                                     >  1:220584‑M1/22‑86 (MQ=255)                                                                                                           tccgctgccGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCCgcgcgc                         <  1:39232‑M1/125‑1 (MQ=255)                                                                                                                          GCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGCCCTGCAGCAGGCCgg          >  2:962461‑M1/1‑134 (MQ=255)                                                                                                                             ccgcgccGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGCCCTGCAGCAGGCCGgcgc       >  2:418395‑M2/8‑134 (MQ=255)                                                                                                                                  CCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGCCCTGCAGCAGGCCGGCGCGATCg  <  1:377111‑M1/134‑1 (MQ=255)                                                                                                                                    |                                                                                                                                    GCAGCACCGGCACCAGCTCGGCGGCATCGCGCAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGCCCTGCAGCAGGCCGGCGCGATCG  >  AM260479/2605594‑2605856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.