New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 2605709 =12 (0.440)3 (0.130) 3/180 2.2 22.9% coding (594/2868 nt) addB two domain protein: Inactivated superfamily I helicase and RecB family exonuclease
?AM260479 2605725 = 10 (0.430)coding (578/2868 nt) addB two domain protein: Inactivated superfamily I helicase and RecB family exonuclease

GCAGCACCGGCACCAGCTCGGCGGCATCGCGCAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGCCCTGCAGCAGGCCGGCGCGATCG  >  AM260479/2605594‑2605856
                                                                                                                                   |                                                                                                                                   
gcagcaCCGGCACCAGCTCGGCGGCATCGCGCAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCgg                                                                                                                                    >  1:962461/1‑133 (MQ=255)
      gcgcgcgggaacggacctattcgcatctgtccgagcgcttcctcggcgaagaggcgcgcatcgtgctggcattctggcaggcgctgtccggcccggacgatccgctgccggcgcggcgccgcgccGGCAGCGGa                                                                                                                             <  1:39232‑M2/9‑1 (MQ=255)
                              gcAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAg                                                                                                                                 <  2:999141/106‑1 (MQ=255)
                              gcAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAg                                                                                                                                 >  1:999141/1‑106 (MQ=255)
                                                                  tcgtgctggcattctggcaggcgctgtccggcccggacgatccgctgccggcgcggcgccgcgccGGCAGCGGATCGTCCGGGCCg                                                                                                                 >  1:220584‑M2/66‑86 (MQ=255)
                                                                  tcgtgctggcattctggcaggcgctgtccggcccggacgatccgctgccGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCg                                                                                                                 >  2:220584‑M1/50‑86 (MQ=255)
                                                                       aTCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAgcg                                                            >  1:923262/1‑134 (MQ=255)
                                                                            gATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCg                                                        >  1:923597/1‑133 (MQ=255)
                                                                                 ccGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCt                                                          <  1:262145/126‑1 (MQ=255)
                                                                                 ccGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCt                                                          >  2:262145/1‑126 (MQ=255)
                                                                                    ggCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGc                                               <  1:1056577/134‑1 (MQ=255)
                                                                                      ccGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAgcgc                                                                                                         <  2:173551/74‑1 (MQ=255)
                                                                                      ccGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAgcgc                                                                                                         >  1:173551/1‑74 (MQ=255)
                                                                                              cggcccggacgatccgctgccggcgcggcgccgcgccGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGa                                                                                     >  2:220584‑M2/38‑86 (MQ=255)
                                                                                              cggcccggacgatccgctgccGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGa                                                                                     >  1:220584‑M1/22‑86 (MQ=255)
                                                                                                          tccgctgccGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCCgcgcgc                         <  1:39232‑M1/125‑1 (MQ=255)
                                                                                                                         GCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGCCCTGCAGCAGGCCgg          >  2:962461‑M1/1‑134 (MQ=255)
                                                                                                                            ccgcgccGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGCCCTGCAGCAGGCCGgcgc       >  2:418395‑M2/8‑134 (MQ=255)
                                                                                                                                 CCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGCCCTGCAGCAGGCCGGCGCGATCg  <  1:377111‑M1/134‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                   
GCAGCACCGGCACCAGCTCGGCGGCATCGCGCAGGAACGCGGCTTCAAGCGGCGTGGGCGGGGTCGGGGCAATCCAGATCACCGGGCCGCGCAGCTGCTGCGACAGCTCGCGCAAGGCGCGGCGCCGCGCCGGCAGCGGATCGTCCGGGCCGGACAGCGCCTGCCAGAATGCCAGCACGATGCGCGCCTCTTCGCCGAGGAAGCGCTCGGACAGATGCGAATAGGTCCGTTCCAGCGCGCCCTGCAGCAGGCCGGCGCGATCG  >  AM260479/2605594‑2605856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.