New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	709929 =	15 (0.530)	5 (0.190)	5/192	1.8	24.6%	coding (978/1185 nt)	h16_B0635	transcriptional regulator, LuxR‑family
	?	AM260480	709973 =	17 (0.660)					coding (1022/1185 nt)	h16_B0635	transcriptional regulator, LuxR‑family

GCCAGGCTGGGCGTGCTGATCCGCACCATCCCGCTCAGCGAGTGGTCCGAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTG  >  AM260480/709801‑710052                                                                                                                                 |                                                                                                                            caccagcgtggcctgccgggtcacgccggtcttggagaagatcgcgcgcaggtgcgcgcgcgccgtgttcttgctgatgccgagctcgtccgcagcctcatcgagcgtgagcccgttggccagctgcagcgc                                                                                                                          <  2:265269‑M1/4‑1 (MQ=255)      gcgtggcctgccgggtcacgccggtcttggagaagatcgcgcgcaggtgcgcgcgcgccgtgttcttgctgatgccgagctcgtccgcagcctcatcgagcgtgagcccgttggccagctgcaGCGCCAGCTGt                                                                                                                   <  2:1033966‑M1/11‑1 (MQ=255)                                                cGAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTgg                                                                         <  1:480354/134‑1 (MQ=255)                                                 gAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGc                                                                        >  1:1054250/1‑134 (MQ=255)                                                   ggACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGcc                                                                       >  2:115431/1‑133 (MQ=255)                                                             aaGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACg                                                                                            <  2:559822/102‑1 (MQ=255)                                                             aaGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACg                                                                                            >  1:559822/1‑102 (MQ=255)                                                                cgtgttcttgctgatgccgagctcgtccgcagcctcatcgagcgtgagcccgttggccagctgcaGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTgg                                                                                     >  1:1055141‑M1/66‑106 (MQ=255)                                                                cgtgttcttgctgatgccgagctcgtccgcagcctcatcgagcgtgagcccgttggccagctgcaGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTgg                                                                                     <  2:1055141‑M1/41‑1 (MQ=255)                                                                cgcCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCt                                                         <  1:115431/134‑1 (MQ=255)                                                                           cGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTg                                              >  1:778814/1‑134 (MQ=255)                                                                                  gagctcgtccgcagcctcatcgagcgtgagcccgttggccagctgcaGCGCCAGCt                                                                                                                     >  1:572827‑M1/48‑56 (MQ=255)                                                                                  gagctcgtccgcagcctcatcgagcgtgagcccgttggccagctgcaGCGCCAGCt                                                                                                                     <  2:572827‑M1/9‑1 (MQ=255)                                                                                     aTCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCt                                    <  1:5779/134‑1 (MQ=255)                                                                                        cgcgACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCgg                                 <  2:796148/134‑1 (MQ=255)                                                                                              cccGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAg                           >  2:659397/1‑134 (MQ=255)                                                                                                cGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTc                                   >  1:587261/1‑124 (MQ=255)                                                                                                cGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTc                                   <  2:587261/124‑1 (MQ=255)                                                                                                      gcgcTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAaca                   <  2:1054250/134‑1 (MQ=255)                                                                                                           cGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGgc                                                                                    <  1:591130/64‑1 (MQ=255)                                                                                                           cGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGgc                                                                                    >  2:591130/1‑64 (MQ=255)                                                                                                                       gccagctgcaGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTg  <  2:206586‑M1/124‑1 (MQ=255)                                                                                                                       gccagctgcaGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTg  >  1:206586‑M1/11‑134 (MQ=255)                                                                                                                                 |                                                                                                                            GCCAGGCTGGGCGTGCTGATCCGCACCATCCCGCTCAGCGAGTGGTCCGAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTG  >  AM260480/709801‑710052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.