New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	709929 =	15 (0.530)	5 (0.190)	5/192	1.8	24.6%	coding (978/1185 nt)	h16_B0635	transcriptional regulator, LuxR‑family
	?	AM260480	709973 =	17 (0.660)					coding (1022/1185 nt)	h16_B0635	transcriptional regulator, LuxR‑family

CGAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCGGCAGGCCACGCTGGTG  >  AM260480/709848‑710100                                                                                                                              |                                                                                                                                cGAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTgg                                                                                                                         <  1:480354/134‑1 (MQ=255)  gAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGc                                                                                                                        >  1:1054250/1‑134 (MQ=255)  caggtgcgcgcgcgccgtgttcttgctgatgccgagctcgtccgcagcctcatcgagcgtgagcccgttggccagctgcagcgccagctgcgtctccgccggggtgaagtcgaacagctggcgcTGCAGCTGGc                                                                                                                        >  1:206586‑M2/125‑134 (MQ=255)  caggtgcgcgcgcgccgtgttcttgctgatgccgagctcgtccgcagcctcatcgagcgtgagcccgttggccagctgcagcgccagctgcgtctccgccggggtgaagtcgaacagctggcgcTGCAGCTGGc                                                                                                                        <  2:206586‑M2/10‑1 (MQ=255)    ggACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGcc                                                                                                                       >  2:115431/1‑133 (MQ=255)                 cgcCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCt                                                                                                         <  1:115431/134‑1 (MQ=255)                            cGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTg                                                                                              >  1:778814/1‑134 (MQ=255)                                      aTCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCt                                                                                    <  1:5779/134‑1 (MQ=255)                                         cgcgACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCgg                                                                                 <  2:796148/134‑1 (MQ=255)                                               cccGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAg                                                                           >  2:659397/1‑134 (MQ=255)                                                 cGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTc                                                                                   <  2:587261/124‑1 (MQ=255)                                                 cGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTc                                                                                   >  1:587261/1‑124 (MQ=255)                                                       gcgcTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAaca                                                                   <  2:1054250/134‑1 (MQ=255)                                                                        gccagctgcaGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTg                                                  >  1:206586‑M1/11‑134 (MQ=255)                                                                        gccagctgcaGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTg                                                  <  2:206586‑M1/124‑1 (MQ=255)                                                                                     ccagctgcgtctccgccggggtgaagtcgaacagctggcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACg                                                                 >  1:1055141‑M2/42‑106 (MQ=255)                                                                                     ccagctgcgtctccgccggggtgaagtcgaacagctggcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACg                                                                 <  2:1055141‑M2/65‑1 (MQ=255)                                                                                          TGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCt                                                                                               <  2:382442‑M1/71‑1 (MQ=255)                                                                                          TGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCt                                                                                               >  1:382442‑M1/1‑71 (MQ=255)                                                                                            ttCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGAc                              >  2:218383/1‑134 (MQ=255)                                                                                                        ccGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCg                  >  1:265269/1‑134 (MQ=255)                                                                                                        ccGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCg                  >  1:135829/1‑134 (MQ=255)                                                                                                          ggcggAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCGGc                <  2:135829/134‑1 (MQ=255)                                                                                                               agaCGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTgcgc                                               >  1:519272/1‑98 (MQ=255)                                                                                                               agaCGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTgcgc                                               <  2:519272/98‑1 (MQ=255)                                                                                                                   acagctggcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCGGCAGGCCACGc       <  2:1033966‑M2/123‑1 (MQ=255)                                                                                                                     agctggcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTc                                                                                   >  1:572827‑M2/10‑56 (MQ=255)                                                                                                                     agctggcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTc                                                                                   <  2:572827‑M2/47‑1 (MQ=255)                                                                                                                          gcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCGGCAGGCCACGCTGGTg  <  2:265269‑M2/128‑1 (MQ=255)                                                                                                                              |                                                                                                                                CGAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCGGCAGGCCACGCTGGTG  >  AM260480/709848‑710100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.