New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 709929 =15 (0.530)5 (0.190) 5/192 1.8 24.6% coding (978/1185 nt) h16_B0635 transcriptional regulator, LuxR‑family
?AM260480 709973 = 17 (0.660)coding (1022/1185 nt) h16_B0635 transcriptional regulator, LuxR‑family

CGAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCGGCAGGCCACGCTGGTG  >  AM260480/709848‑710100
                                                                                                                             |                                                                                                                               
cGAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTgg                                                                                                                         <  1:480354/134‑1 (MQ=255)
 gAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGc                                                                                                                        >  1:1054250/1‑134 (MQ=255)
 caggtgcgcgcgcgccgtgttcttgctgatgccgagctcgtccgcagcctcatcgagcgtgagcccgttggccagctgcagcgccagctgcgtctccgccggggtgaagtcgaacagctggcgcTGCAGCTGGc                                                                                                                        >  1:206586‑M2/125‑134 (MQ=255)
 caggtgcgcgcgcgccgtgttcttgctgatgccgagctcgtccgcagcctcatcgagcgtgagcccgttggccagctgcagcgccagctgcgtctccgccggggtgaagtcgaacagctggcgcTGCAGCTGGc                                                                                                                        <  2:206586‑M2/10‑1 (MQ=255)
   ggACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGcc                                                                                                                       >  2:115431/1‑133 (MQ=255)
                cgcCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCt                                                                                                         <  1:115431/134‑1 (MQ=255)
                           cGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTg                                                                                              >  1:778814/1‑134 (MQ=255)
                                     aTCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCt                                                                                    <  1:5779/134‑1 (MQ=255)
                                        cgcgACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCgg                                                                                 <  2:796148/134‑1 (MQ=255)
                                              cccGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAg                                                                           >  2:659397/1‑134 (MQ=255)
                                                cGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTc                                                                                   <  2:587261/124‑1 (MQ=255)
                                                cGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTc                                                                                   >  1:587261/1‑124 (MQ=255)
                                                      gcgcTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAaca                                                                   <  2:1054250/134‑1 (MQ=255)
                                                                       gccagctgcaGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTg                                                  >  1:206586‑M1/11‑134 (MQ=255)
                                                                       gccagctgcaGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTg                                                  <  2:206586‑M1/124‑1 (MQ=255)
                                                                                    ccagctgcgtctccgccggggtgaagtcgaacagctggcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACg                                                                 >  1:1055141‑M2/42‑106 (MQ=255)
                                                                                    ccagctgcgtctccgccggggtgaagtcgaacagctggcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACg                                                                 <  2:1055141‑M2/65‑1 (MQ=255)
                                                                                         TGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCt                                                                                               <  2:382442‑M1/71‑1 (MQ=255)
                                                                                         TGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCt                                                                                               >  1:382442‑M1/1‑71 (MQ=255)
                                                                                           ttCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGAc                              >  2:218383/1‑134 (MQ=255)
                                                                                                       ccGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCg                  >  1:265269/1‑134 (MQ=255)
                                                                                                       ccGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCg                  >  1:135829/1‑134 (MQ=255)
                                                                                                         ggcggAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCGGc                <  2:135829/134‑1 (MQ=255)
                                                                                                              agaCGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTgcgc                                               >  1:519272/1‑98 (MQ=255)
                                                                                                              agaCGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTgcgc                                               <  2:519272/98‑1 (MQ=255)
                                                                                                                  acagctggcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCGGCAGGCCACGc       <  2:1033966‑M2/123‑1 (MQ=255)
                                                                                                                    agctggcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTc                                                                                   >  1:572827‑M2/10‑56 (MQ=255)
                                                                                                                    agctggcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTc                                                                                   <  2:572827‑M2/47‑1 (MQ=255)
                                                                                                                         gcgcTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCGGCAGGCCACGCTGGTg  <  2:265269‑M2/128‑1 (MQ=255)
                                                                                                                             |                                                                                                                               
CGAGGACAACCGCAAGCGCCCCGCCTGCGTGGTGTTCATCCGCGACCCCGAGCGGCGCTCGCAGGCCTCGCACGAGGTCGTGCGCCAGCTGTTCGACTTCACCCCGGCGGAGACGCAGCTGGCGCTGCAGCTGGCCAACGGGCTCACGCTCGATGAGGCTGCGGACGAGCTCGGCATCAGCAAGAACACGGCGCGCGCGCACCTGCGCGCGATCTTCTCCAAGACCGGCGTGACCCGGCAGGCCACGCTGGTG  >  AM260480/709848‑710100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.