| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 973838–974895 | 975157 | 263–1320 | 29 [0] | [0] 29 | [h16_A0881]–h16_A0882 | [h16_A0881],h16_A0882 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 973837 | NA (NA) | 26 (1.070) | 19/190 | 0.3 | NA | noncoding (2/1312 nt) | ISAE1 | insertion sequence ISAE1 isolog |
| ? | AM260479 | 975158 = | NA (NA) | intergenic (‑201/+329) | h16_A0881/h16_A0883 | ISAE1 Orf2 fusion protein/Hypothetical protein | |||||
GGTTATGTGAGCTTCAAAACCATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTCTCCGCGATCAACCCGCATGCCGCATAACCCACTCATTTTTCAAAAGAGCCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAGGAGCGCCACCGTGGGCGC > AM260479/975035‑975288 | tctggccgctggggcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGAc > 2:16501‑M2/124‑134 (MQ=255) tggccgctggggcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGAc < 2:753307‑M2/11‑1 (MQ=255) gcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTc > 1:294037‑M2/111‑133 (MQ=255) cggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAg < 2:693873‑M2/26‑1 (MQ=255) cggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAg > 1:693873‑M2/91‑116 (MQ=255) cggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCaaa > 2:185094‑M2/91‑134 (MQ=255) gcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGt < 2:736148‑M2/49‑1 (MQ=255) ttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 2:497353‑M2/52‑1 (MQ=255) ttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 2:294037‑M2/52‑1 (MQ=255) gggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGt < 1:185094‑M2/54‑1 (MQ=255) ttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 1:143673‑M2/52‑103 (MQ=255) ttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 2:143673‑M2/52‑1 (MQ=255) ttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa < 1:900920‑M2/83‑1 (MQ=255) gatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGcc < 1:22147‑M2/87‑1 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 1:484423‑M2/39‑90 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 2:484423‑M2/52‑1 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa < 2:924506‑M2/83‑1 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa > 1:924506‑M2/39‑121 (MQ=255) tgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 2:343650‑M2/52‑1 (MQ=255) tgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 1:343650‑M2/38‑89 (MQ=255) gcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGAcc > 1:857672‑M2/33‑134 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCgg < 2:440601‑M2/40‑1 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCgg > 1:440601‑M2/32‑71 (MQ=255) cgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGaaa < 1:597535‑M2/112‑1 (MQ=255) gttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGtgtg > 1:826045‑M2/15‑85 (MQ=255) gttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGtgtg < 2:826045‑M2/71‑1 (MQ=255) cTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa < 1:845936‑M2/83‑1 (MQ=255) cTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa > 2:845936‑M2/2‑84 (MQ=255) cTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAGGAGCGCCACCGTGGgcgc > 1:668445‑M2/2‑132 (MQ=255) | GGTTATGTGAGCTTCAAAACCATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTCTCCGCGATCAACCCGCATGCCGCATAACCCACTCATTTTTCAAAAGAGCCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAGGAGCGCCACCGTGGGCGC > AM260479/975035‑975288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |