| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 973838–974895 | 975157 | 263–1320 | 29 [0] | [0] 29 | [h16_A0881]–h16_A0882 | [h16_A0881],h16_A0882 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 973837 | NA (NA) | 26 (1.070) | 19/190 | 0.3 | NA | noncoding (2/1312 nt) | ISAE1 | insertion sequence ISAE1 isolog |
| ? | AM260479 | 975158 = | NA (NA) | intergenic (‑201/+329) | h16_A0881/h16_A0883 | ISAE1 Orf2 fusion protein/Hypothetical protein | |||||
TCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCGTCCGGGAAGTCGACTTCA > AM260479/973715‑973968 | tctGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgac > 2:16501‑M1/1‑123 (MQ=255) tGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgac < 2:753307‑M1/132‑12 (MQ=255) gCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtc > 1:294037‑M1/1‑110 (MQ=255) cGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaa > 2:185094‑M1/1‑90 (MQ=255) cGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgag < 2:693873‑M1/116‑27 (MQ=255) cGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgag > 1:693873‑M1/1‑90 (MQ=255) gCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagt < 2:736148‑M1/134‑50 (MQ=255) ttGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 2:497353‑M1/133‑53 (MQ=255) ttGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 2:294037‑M1/133‑53 (MQ=255) gggTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgt < 1:185094‑M1/133‑55 (MQ=255) ttAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca < 1:900920‑M1/134‑84 (MQ=255) ttAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 1:143673‑M1/1‑51 (MQ=255) ttAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 2:143673‑M1/103‑53 (MQ=255) gATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcc < 1:22147‑M1/134‑88 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca < 2:924506‑M1/121‑84 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca > 1:924506‑M1/1‑38 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 2:484423‑M1/90‑53 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 1:484423‑M1/1‑38 (MQ=255) tgtgCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 2:343650‑M1/89‑53 (MQ=255) tgtgCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 1:343650‑M1/1‑37 (MQ=255) gcAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgacc > 1:857672‑M1/1‑32 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcgg < 2:440601‑M1/71‑41 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcgg > 1:440601‑M1/1‑31 (MQ=255) cgcCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtcggaaa < 1:597535‑M1/134‑113 (MQ=255) gTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtg > 1:826045‑M1/1‑14 (MQ=255) gTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtg < 2:826045‑M1/85‑72 (MQ=255) ctcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtcggaaaggagcgccaccgtgggcgc > 1:668445‑M1/1‑1 (MQ=255) ctcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca < 1:845936‑M1/84‑84 (MQ=255) ctcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca > 2:845936‑M1/1‑1 (MQ=255) | TCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCGTCCGGGAAGTCGACTTCA > AM260479/973715‑973968 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |