New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 254635	16 (0.580)	4 (0.160)	3/194	2.3	20.3%	coding (306/453 nt)	h16_A0241	Uncharacterized protein, possibly involved in aromatic compounds catabolism
	?	AM260479	= 254653	17 (0.690)					coding (324/453 nt)	h16_A0241	Uncharacterized protein, possibly involved in aromatic compounds catabolism

GCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/254499‑254635 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcgcgcCTCCAGCGTCAGCTCGCCGCGCGCTGCCGCCAGGAAATGCGTGGACATGTCGATCGTGATCACGCCGGTTTCCAGCGGCGCATGCGAGCGCGCGGCGCCGCTCAGGGTGAAGTCCAGCGTCGCCATCAGCGT  <  AM260479/254653‑254522                                                                                                                                                                                                                                                                               GCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCG                                                                                                                                         >  2:233543/1‑134                                                                                     AAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCCTCCAGCGTCAGCTCGCCG                                                                                                                   >  1:623002/1‑72                                                                                     AAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCCTCCAGCGTCAGCTCGCCG                                                                                                                   <  2:623002/72‑1                                                                                                ATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCCTCCAGCGTCAGCTCGCCGCGCGCTGCCGCCAGGAAATGCGTGGACATGTCGATCGTGATCACGCCGGTTTCCAGCGGCGCATGCGAGCGCG                                          >  1:16705/1‑134                                                                                                ATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCCTCCAGCGTCAGCTCGCCGCGCGCTGCCGCCAGGAAATGCGTGGACATGTCAATCGTGATCACGCCGGTTTCCAGCGGCGCATGCGAGCGCG                                          >  1:1074340/1‑134                                                                                                                                        GCCTCCAGCGTCAGCTCGCCGCGCGCTGCCGCCAGGAAATGCGTGGACATGTCGATCGTGATCACGCCGGTTTCCAGCGGCGCATGCGAGCGCGCGGCGCCGCTCAGGGTGAAGTCCAGCGTCGCCATCAGCGT  <  2:1074340/134‑1                                                                                                                                        GCCTCCAGCGTCAGCTCGCCGCGCGCTGCCGCCAGGAAATGCGTGGACATGTCGATCGTGATCACGCCGGTTTCCAGCGGCGCATGCGAGCGCGCGGCGCCGCTCAGGGTGAAGTCCAGCGTCGCCATCAGCGT  <  2:16705/134‑1                                                                                                                                                                                                                                                                               GCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/254499‑254635 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcgcgcCTCCAGCGTCAGCTCGCCGCGCGCTGCCGCCAGGAAATGCGTGGACATGTCGATCGTGATCACGCCGGTTTCCAGCGGCGCATGCGAGCGCGCGGCGCCGCTCAGGGTGAAGTCCAGCGTCGCCATCAGCGT  <  AM260479/254653‑254522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.