New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 254635	16 (0.580)	4 (0.160)	3/194	2.3	20.3%	coding (306/453 nt)	h16_A0241	Uncharacterized protein, possibly involved in aromatic compounds catabolism
	?	AM260479	= 254653	17 (0.690)					coding (324/453 nt)	h16_A0241	Uncharacterized protein, possibly involved in aromatic compounds catabolism

ACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTGCGAGGGCGAGGTCAAGGATGCTGCCGGCACCGTGGTGTGCGTGGCGCGGGCCGCGTTCAAGCTGGTGCCGCTGTCCGCCGGCG  >  AM260479/254522‑254774                                                                                                                                    |                                                                                                                          aCGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGgc                                                                                                                         <  2:16705‑M2/134‑3 (MQ=255) aCGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGgc                                                                                                                         <  2:1074340‑M2/134‑3 (MQ=255)                        cACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGgcgc                                                                                                    <  2:499281/132‑1 (MQ=255)                                        gcgcgcTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCgcattgcatt                                                                                        <  2:59582/128‑1 (MQ=255)                                        gcgcgcTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCgcattgcatt                                                                                        >  1:59582/1‑128 (MQ=255)                                         cgcgcTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATTGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGgcgcgctgccgccaggaaatgcgtggacatgtcgatcgtgat                                                                                 >  1:1074340‑M2/1‑92 (MQ=255)                                         cgcgcTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGgcgcgctgccgccaggaaatgcgtggacatgtcgatcgtgat                                                                                 >  1:16705‑M2/1‑92 (MQ=255)                                                              aaaCCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTgcg                                                                                   <  1:511624/111‑1 (MQ=255)                                                              aaaCCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTgcg                                                                                   >  2:511624/1‑111 (MQ=255)                                                              aaaCCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTGCGAGGGCGAGGTCAAGGATGCTGcc                                                            >  1:239916/1‑134 (MQ=255)                                                                        gATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTGCGAGGGCGAGGTCAAGGATGCTGCCGGCACCgtgg                                                  >  2:72850/1‑134 (MQ=255)                                                                           cACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTGCGAGGGCGAGGTCAAGGATGCTGCCgg                                                          >  2:170388/1‑123 (MQ=255)                                                                           cACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTGCGAGGGCGAGGTCAAGGATGCTGCCgg                                                          <  1:170388/123‑1 (MQ=255)                                                                                                tttCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCgcat                                                                                              >  1:656176/1‑66 (MQ=255)                                                                                                tttCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCgcat                                                                                              <  2:656176/66‑1 (MQ=255)                                                                                                      ggcggcAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTgcgag                                                                                 >  1:470435/1‑73 (MQ=255)                                                                                                      ggcggcAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTgcgag                                                                                 <  2:470435/73‑1 (MQ=255)                                                                                                      gacggcAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTGCGAGGGCGAGGTCAAGGATGCTGCCGGCACCGTGGTGTGCGTGGCGCGGGCCGCGTTCAAGCTgg                    >  2:978181/3‑134 (MQ=255)                                                                                                               gcgcgGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTGCGAGGGCGAGGTCAAGGATGCTGCCGGCACCGTGGTGTGCGTGGCGCGGGCCGCGTTCAAGCTGGTGCCGCTGt           >  2:514002/1‑134 (MQ=255)                                                                                                                  cggcgAGCTGACGCTGGAGgcgcgctgccgccaggaaatgcgtggacatgtcgatcgtgatcacgccggttt                                                                      >  1:623002‑M2/1‑19 (MQ=255)                                                                                                                  cggcgAGCTGACGCTGGAGgcgcgctgccgccaggaaatgcgtggacatgtcgatcgtgatcacgccggttt                                                                      <  2:623002‑M2/72‑54 (MQ=255)                                                                                                                   ggcgAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTGCGAGGGCGAGGTCAAGGATGCTGCCGGCACCGTGGTGTGCGTGGCGCGGGCCGCGTTCAAGCTGGTGCCGCTGTccgc       <  1:514002/134‑1 (MQ=255)                                                                                                                        gCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTGCGAGGGCGAGGTCAAGGATGCTGCCGGCACCGTGGTGTGCGTGGCGCGGGCCGCGTTCAAGCTGGTGCCGCTGTCCGCcggcg  <  1:72850/134‑1 (MQ=255)                                                                                                                                    |                                                                                                                          ACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTCTGCGAGGGCGAGGTCAAGGATGCTGCCGGCACCGTGGTGTGCGTGGCGCGGGCCGCGTTCAAGCTGGTGCCGCTGTCCGCCGGCG  >  AM260479/254522‑254774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.