New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 513443	18 (0.660)	4 (0.160)	4/198	2.0	20.7%	coding (1092/1131 nt)	h16_A0488	conserved hypothetical protein
	?	AM260479	= 513567	14 (0.550)					coding (968/1131 nt)	h16_A0488	conserved hypothetical protein

CCGGCCATGCGGGCCTCGCCGCTGGCACAAGCGTTCATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/513330‑513443 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggcgTGGCCATCGAGACCTCGGATGACTACGGCGTGCCGGTGTCGCAGGTCGAAGCCAT  <  AM260479/513567‑513513                                                                                                                                                                           CCGGCCATGCGGGCCTCGCCGCTGGCACAAGCGTTCATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGTGGCCATCGAGACCTCGGAT                                     >  1:216421/1‑134                           ACAAGCGTTCATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGC                                                          <  1:243877/87‑1                           ACAAGCGTTCATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGC                                                          >  2:243877/1‑87                                     ATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGTGGCCATCGAGACCTCGGATGACTACGGCGTGCCGGTGTCGCAGGTCGAAGCCAT  <  2:216421/133‑1                                                 GAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGTGGCCATCGAGACCTCGGATGAC                                  >  1:561923/1‑89                                                 GAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGTGGCCATCGAGACCTCGGATGAC                                  <  2:561923/89‑1                                                                                                                                                                           CCGGCCATGCGGGCCTCGCCGCTGGCACAAGCGTTCATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/513330‑513443 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggcgTGGCCATCGAGACCTCGGATGACTACGGCGTGCCGGTGTCGCAGGTCGAAGCCAT  <  AM260479/513567‑513513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.