New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 513443	18 (0.660)	4 (0.160)	4/198	2.0	20.7%	coding (1092/1131 nt)	h16_A0488	conserved hypothetical protein
	?	AM260479	= 513567	14 (0.550)					coding (968/1131 nt)	h16_A0488	conserved hypothetical protein

GGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGGCGCGCATCAGGCGCATGGGTGCGCATGTCGCGCGCGATGGCCTCGGCAGTCAGCGC  >  AM260479/513443‑513697                                                                                                                             |                                                                                                                                   ggcgCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCa                                                                                                                           <  2:450621/134‑1 (MQ=255)                       ttGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCAt                                                                                                     <  2:675429/134‑1 (MQ=255)                                             acgcttgTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGcgccg                                                                               >  1:712020/7‑134 (MQ=255)                                                 gCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGcgccgccgc                                                                           >  2:380214/1‑134 (MQ=255)                                                                aaaGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAggc                                                            <  2:712020/134‑1 (MQ=255)                                                                       aTGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCAcgccgggccgcgcgtgctgggcgcgatctatccgcgctaaggcaggcgcatcgcgccgcccgcctccacccaatccat                                                      <  2:216421‑M2/133‑79 (MQ=255)                                                                                         acCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGgcgcg                                                      >  1:707367/1‑115 (MQ=255)                                                                                         acCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGgcgcg                                                      <  2:707367/115‑1 (MQ=255)                                                                                                    ggtgTCATCCGAGGTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGGCGCGCATCAGGCGCATGGGTGCGCATGTcgcgcg                        >  2:868866/4‑134 (MQ=255)                                                                                                       gTCATCCGAGGTCTCGATGGCCAcgccgggccgcgcgtgctgggcgcgatctatccgcgctaaggcaggcgcatcgcgccgcccgcctc                                                                  >  1:561923‑M2/1‑23 (MQ=255)                                                                                                       gTCATCCGAGGTCTCGATGGCCAcgccgggccgcgcgtgctgggcgcgatctatccgcgctaaggcaggcgcatcgcgccgcccgcctc                                                                  <  2:561923‑M2/89‑67 (MQ=255)                                                                                                          aTCCGAGGTCTCGATGGCCAcgccgggccgcgcgtgctgggcgcgatctatccgcgctaaggcaggcgcatcgcgccgcccgcctccacccaatccatgaacgcttgtgccagcggcgaggcccgcatggccgg                  >  1:216421‑M2/1‑20 (MQ=255)                                                                                                                 gTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGGCGCGCATCa                                                 <  2:105503/96‑1 (MQ=255)                                                                                                                 gTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGGCGCGCATCa                                                 >  1:105503/1‑96 (MQ=255)                                                                                                                   ctcGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGGCGCGCATCAGGCGCATGGGTGCGCATGTCGCGCGCGATGGCCTCGGCAg         >  2:716786/1‑134 (MQ=255)                                                                                                                      gATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGGCGCGCATCAGGCGCATGGGTGCGCATGTCGCGCGCGATGGCCTCGGCAGt        <  2:918676/132‑1 (MQ=255)                                                                                                                      gATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGGCGCGCATCAGGCGCATGGGTGCGCATGTCGCGCGCGATGGCCTCGGCAGTCa      <  1:716786/134‑1 (MQ=255)                                                                                                                          gCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGGCGCGCATCAGGCGCATGGGTGCGCATGTCGCGCGCGATGGCCTCGGCAGTCAgcgc  >  2:1058749/1‑134 (MQ=255)                                                                                                                             |                                                                                                                                   GGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCAATGCCTGCGTCAGTCGTGCCATCACGAACGCATTGCGGGCGCCGCCGCCGCAGACGATCAGGCGGCGCGCATCAGGCGCATGGGTGCGCATGTCGCGCGCGATGGCCTCGGCAGTCAGCGC  >  AM260479/513443‑513697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.