New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 513443	18 (0.660)	4 (0.160)	4/198	2.0	20.7%	coding (1092/1131 nt)	h16_A0488	conserved hypothetical protein
	?	AM260479	= 513567	14 (0.550)					coding (968/1131 nt)	h16_A0488	conserved hypothetical protein

GTGCTGGCGCGCTCGCCGGCCATGCGGGCCTCGCCGCTGGCACAAGCGTTCATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCA  >  AM260479/513315‑513576                                                                                                                                 |                                                                                                                                      gtgCTGGCGCGCTCGCCGGCCATGCGGGCCTCGCCGCTGGCACAAGCGTTCATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGcc                                                                                                                                  <  1:115100/134‑1 (MQ=255)                ccGGCCATGCGGGCCTCGCCGCTGGCACAAGCGTTCATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGtggccatcgagacctcggat                                                                                                                   >  1:216421‑M1/1‑114 (MQ=255)                                                 ttCATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTgc                                                                                  <  2:955986/134‑1 (MQ=255)                                                    aTGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGtggccatcgagacctcggatgactacggcgtgccggtgtcgcaggtcgaagccat                                                                                <  2:216421‑M1/133‑56 (MQ=255)                                                              tGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAg                                                                     <  2:1085352/134‑1 (MQ=255)                                                                gAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGtggccatcgagacctcggatgac                                                                                                                >  1:561923‑M1/1‑66 (MQ=255)                                                                gAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGtggccatcgagacctcggatgac                                                                                                                <  2:561923‑M1/89‑24 (MQ=255)                                                                      ggcggcGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGc                                                             >  2:832578/1‑134 (MQ=255)                                                                          gcgcGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTc                                                          >  2:768469/1‑133 (MQ=255)                                                                                  cgcCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCg                                                  <  1:832578/133‑1 (MQ=255)                                                                                    cctgcctTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGaca                                               <  1:768469/134‑1 (MQ=255)                                                                                            aGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACg                                       >  2:950757/1‑134 (MQ=255)                                                                                              cgcgGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTg                                                                                                                        <  2:1029629/51‑1 (MQ=255)                                                                                              cgcgGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTg                                                                                                                        >  1:1029629/1‑51 (MQ=255)                                                                                                      gATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCAt                             >  2:533533/1‑134 (MQ=255)                                                                                                      gATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCAt                             >  1:450621/1‑134 (MQ=255)                                                                                                       aTCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATc                            <  1:950757/134‑1 (MQ=255)                                                                                                           cgcCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAg                        >  1:918676/1‑134 (MQ=255)                                                                                                                 gCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGtctc                   >  1:675429/1‑133 (MQ=255)                                                                                                                              ggcggcGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATc                            >  1:690189/1‑111 (MQ=255)                                                                                                                              ggcggcGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATc                            <  2:690189/111‑1 (MQ=255)                                                                                                                                 ggcgCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCa  <  2:450621/134‑1 (MQ=255)                                                                                                                                 |                                                                                                                                      GTGCTGGCGCGCTCGCCGGCCATGCGGGCCTCGCCGCTGGCACAAGCGTTCATGGATTGGGTGGAGGCGGGCGGCGCGATGCGCCTGCCTTAGCGCGGATAGATCGCGCCCAGCACGCGCGGCCCGGCGGCGCCGGTCACGGTGGGCACGTTGCCGGGCAGGCGCAGCAGGCACTGGCGTGCCAGCCAGGCAAAGGCGATGGCTTCGACCTGCGACACCGGCACGCCGTAGTCATCCGAGGTCTCGATGGCCACGCCGGGCA  >  AM260479/513315‑513576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.