| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 872790 = | 28 (1.020) | 5 (0.200) | 5/196 | 1.7 | 17.3% | coding (366/423 nt) | ihfB | integration host factor beta subunit |
| ? | AM260479 | 872809 = | 22 (0.880) | coding (385/423 nt) | ihfB | integration host factor beta subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAAGGCCGGCAGCAATAAAAAAAGCGCCCCTAAGGGGGCGCTTTTTTCAACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/872927‑872790‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgggaTTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGGGTTTTGCCTGCTGCTTGTGTGGTTGAAAAAAGCGCCCCCTTAGGGGCGCTTTTTTTATTGCTGCCGGCCTTGCGTGCGCACC > AM260479/872809‑872936 GCAAGGCCGGCAGCAATAAAAAAAGCGCCCCTAAGGGGGCGCTTTTTTAAACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGC < 1:205849/134‑1 ACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGATTGCACGAGGGTTGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGG < 2:936386/134‑1 AGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGATTGCACGAGGGTGGGCTGAATTTTGTCCGCTCT < 1:704498/113‑1 AGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGATTGCACGAGGGTGGGCTGAATTTTGTCCGCTCT > 2:704498/1‑113 CCCGCCGCTGCGGCGGGATTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGGGTTTTGCCTGCTGCTTGTGTGGTTGAAAAAA < 1:505345/95‑1 CCCGCCGCTGCGGCGGGATTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGGGTTTTGCCTGCTGCTTGTGTGGTTGAAAAAA > 2:505345/1‑95 CGGGATTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGGGTTTTGCCTGCTGCTTGTGTGGTTGAAAAAAGCGCCCCCTTAGGGGCGCTTTTTTTATTGCTGCCGGCCTTGCGTGCGCACC > 1:504876/1‑133 GCAAGGCCGGCAGCAATAAAAAAAGCGCCCCTAAGGGGGCGCTTTTTTCAACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/872927‑872790‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgggaTTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGGGTTTTGCCTGCTGCTTGTGTGGTTGAAAAAAGCGCCCCCTTAGGGGCGCTTTTTTTATTGCTGCCGGCCTTGCGTGCGCACC > AM260479/872809‑872936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |