| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 1080762 | 14 (0.510) | 4 (0.160) | 3/196 | 2.3 | 22.3% | coding (190/369 nt) | h16_A0988 | Hypothetical protein |
| ? | AM260479 | = 1080786 | 15 (0.600) | coding (214/369 nt) | h16_A0988 | Hypothetical protein | |||||
CCGTCCGCACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/1080675‑1080762‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcgCACGCTTGACCAGCTCGCGCTCATCGCTGGCCGC < AM260479/1080786‑1080753 CCGTCCGCACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGCACGCTTGACCAGCTCGCGCTCATCGCTGGCCGa > 1:963173/1‑121CCGTCCGCACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGCACGCTTGACCAGCTCGCGCTCATCGCTGGCCGa < 2:963173/122‑2 CACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGCACGCTTGACCAGCTCGCGCTCATCG < 1:670368/107‑1 CACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGCACGCTTGACCAGCTCGCGCTCATCG > 2:670368/1‑107 CCGTCCGCACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/1080675‑1080762‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcgCACGCTTGACCAGCTCGCGCTCATCGCTGGCCGC < AM260479/1080786‑1080753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |