New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1080762	14 (0.510)	4 (0.160)	3/196	2.3	22.3%	coding (190/369 nt)	h16_A0988	Hypothetical protein
	?	AM260479	= 1080786	15 (0.600)					coding (214/369 nt)	h16_A0988	Hypothetical protein

GCGCGGGCTCCGGCGGCTTCCGCGCCCCAGGCAGCGGCACCGTCCGCACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGCGCGAAGTCCG  >  AM260479/1080636‑1080895                                                                                                                               |                                                                                                                                      gcgcGGGCTCCGGCGGCTTCCGCGCCCCAGGCAGCGGCACCGTCCGCACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAgcg                                                                                                                                <  2:668175/134‑1 (MQ=255)                                        ccGTCCGCACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGcacgcttgaccagctcgcgctcatcgctggccga                                                                                                     <  2:963173‑M1/122‑35 (MQ=255)                                        ccGTCCGCACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGcacgcttgaccagctcgcgctcatcgctggccga                                                                                                     >  1:963173‑M1/1‑88 (MQ=255)                                               cACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGcacgcttgaccagctcgcgctcatcg                                                                                                             <  1:670368‑M1/107‑27 (MQ=255)                                               cACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGcacgcttgaccagctcgcgctcatcg                                                                                                             >  2:670368‑M1/1‑81 (MQ=255)                                                                                ccgTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGagc                                                                                                <  1:124123/87‑1 (MQ=255)                                                                                ccgTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGagc                                                                                                >  2:124123/1‑87 (MQ=255)                                                                                     gcgGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCg                                             >  1:15981/1‑133 (MQ=255)                                                                                          ggCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCg                                       >  1:74449/1‑134 (MQ=255)                                                                                               cgcAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCg                                  >  1:314452/1‑134 (MQ=255)                                                                                                 cAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAg                                          <  2:756440/124‑1 (MQ=255)                                                                                                 cAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAg                                          >  1:756440/1‑124 (MQ=255)                                                                                                   ggcggcGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGaaa                              >  1:838929/1‑134 (MQ=255)                                                                                                              cGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACCGGcgccg                   <  2:15981/134‑1 (MQ=255)                                                                                                                      tcggccAGCGATGAGCGCGAGCTGGTCAAGCGTGcgctggccgccacgctcggaatcgccgcctgcgcggcccccgcgacggcggcctgcgccaggtcgggcgcgttgccgcgtgcggacgg                       <  2:963173‑M2/121‑89 (MQ=255)                                                                                                                      tcggccAGCGATGAGCGCGAGCTGGTCAAGCGTGcgctggccgccacgctcggaatcgccgcctgcgcggcccccgcgacggcggcctgcgccaggtcgggcgcgttgccgcgtgcggacgg                       >  1:963173‑M2/2‑34 (MQ=255)                                                                                                                        ggcCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAgcgc          >  1:58973/1‑133 (MQ=255)                                                                                                                         gcCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGcgcg         >  1:528256/1‑133 (MQ=255)                                                                                                                             gCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGCGCGAAGTc    <  2:779414/134‑1 (MQ=255)                                                                                                                              cGATGAGCGCGAGCTGGTCAAGCGTGcgctggccgccacgctcggaatcgccgcctgcgcggcccccgcgacggcggcctgcgccaggtcgggcgcgttgccgcgtg                              >  2:670368‑M2/1‑26 (MQ=255)                                                                                                                              cGATGAGCGCGAGCTGGTCAAGCGTGcgctggccgccacgctcggaatcgccgcctgcgcggcccccgcgacggcggcctgcgccaggtcgggcgcgttgccgcgtg                              <  1:670368‑M2/107‑82 (MQ=255)                                                                                                                               gATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGCGCGAAGTCcg  <  2:74449/134‑1 (MQ=255)                                                                                                                               |                                                                                                                                      GCGCGGGCTCCGGCGGCTTCCGCGCCCCAGGCAGCGGCACCGTCCGCACGCGGCAACGCGCCCGACCTGGCGCAGGCCGCCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGCGCGAAGTCCG  >  AM260479/1080636‑1080895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.