New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1080762	14 (0.510)	4 (0.160)	3/196	2.3	22.3%	coding (190/369 nt)	h16_A0988	Hypothetical protein
	?	AM260479	= 1080786	15 (0.600)					coding (214/369 nt)	h16_A0988	Hypothetical protein

CCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGCGCGAAGTCCGCGTGCGGCTG  >  AM260479/1080715‑1080905                                                                        |                                                                                                                        ccgTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGagc                                                                                                          <  1:124123/87‑1 (MQ=255) ccgTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGagc                                                                                                          >  2:124123/1‑87 (MQ=255)      gcgGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCg                                                       >  1:15981/1‑133 (MQ=255)           ggCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCg                                                 >  1:74449/1‑134 (MQ=255)                cgcAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCg                                            >  1:314452/1‑134 (MQ=255)                  cAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAg                                                    <  2:756440/124‑1 (MQ=255)                  cAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAg                                                    >  1:756440/1‑124 (MQ=255)                    ggcggcGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGaaa                                        >  1:838929/1‑134 (MQ=255)                               cGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACCGGcgccg                             <  2:15981/134‑1 (MQ=255)                                       tcggccAGCGATGAGCGCGAGCTGGTCAAGCGTGcgctggccgccacgctcggaatcgccgcctgcgcggcccccgcgacggcggcctgcgccaggtcgggcgcgttgccgcgtgcggacgg                                 <  2:963173‑M2/121‑89 (MQ=255)                                       tcggccAGCGATGAGCGCGAGCTGGTCAAGCGTGcgctggccgccacgctcggaatcgccgcctgcgcggcccccgcgacggcggcctgcgccaggtcgggcgcgttgccgcgtgcggacgg                                 >  1:963173‑M2/2‑34 (MQ=255)                                         ggcCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAgcgc                    >  1:58973/1‑133 (MQ=255)                                          gcCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGcgcg                   >  1:528256/1‑133 (MQ=255)                                              gCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGCGCGAAGTc              <  2:779414/134‑1 (MQ=255)                                               cGATGAGCGCGAGCTGGTCAAGCGTGcgctggccgccacgctcggaatcgccgcctgcgcggcccccgcgacggcggcctgcgccaggtcgggcgcgttgccgcgtg                                        <  1:670368‑M2/107‑82 (MQ=255)                                               cGATGAGCGCGAGCTGGTCAAGCGTGcgctggccgccacgctcggaatcgccgcctgcgcggcccccgcgacggcggcctgcgccaggtcgggcgcgttgccgcgtg                                        >  2:670368‑M2/1‑26 (MQ=255)                                                gATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGCGCGAAGTCcg            <  2:74449/134‑1 (MQ=255)                                                    aGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGCGCGAAGTCCGCGt         <  2:314452/133‑1 (MQ=255)                                                          aGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGCGCGAAGTCCGCGTGCGGCTg  >  2:835118/1‑134 (MQ=255)                                                                        |                                                                                                                        CCGTCGCGGGGGCCGCGCAGGCGGCGATTCCGAGCGTGGCGGCCAGCGATGAGCGCGAGCTGGTCAAGCGTGCGCTGGCCGAAGAGCAGCGCGGCATGAACGAGGCGATCGCGAACTACGCGCGCGCCAGCAAGGCCGGAGCCGGCCCGGAAACACTGGCGCCGCTGGAGCGCGAAGTCCGCGTGCGGCTG  >  AM260479/1080715‑1080905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.