New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 271232525 (0.910)6 (0.240) 6/196 1.5 20.0% coding (1570/2022 nt) h16_A2497 signal transduction protein
?AM260479 = 2712337 25 (1.000)coding (1582/2022 nt) h16_A2497 signal transduction protein

TGTTCGGGCGCAATGTCACCCATGAGCGCGAAAAACTGCGCAGCCTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2712188‑2712325
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagcgAGCGCCCGTCGGCGCTGGCGCGGGCCATGCATTCGGCCAGGCGCCGGTCGAAACCCTTGCGGTTGAGCAGGCCGGTGAGGTAGTCGGAGATGGTCTGTGCTTCCAGGCTGCGCAGTTTTTCGCGCTCAT  <  AM260479/2712337‑2712209
                                                                                                                                                                                                                                                                           
TGTTCGGGCGCAATGTCACCCATGAGCGCGAAAAACTGCGCAGCGTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGC                                                                                                                                        >  2:785158/1‑133
                           GCGAAAAACTGCGCAGCCTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGAGCGCCCGTCGGCGCTGGCGC                                                                                                              <  1:177945/132‑1
                           GCGAAAAACTGCGCAGCCTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGAGCGCCCGTCGGCGCTGGCGC                                                                                                              >  2:177945/1‑132
                                                                                               GGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGAGCGCCCGTCGGCGCTGGCGCGGGCCATGCATTCGGCCAGGCGCCGGTCGAAACCCTTGCGGTTGAGCAGGCCGGTGAGGTAGTCGGAGAT                                        >  2:333522/1‑134
                                                                                                 TTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGAGCGCCCGTCGGCGCTGGC                                                                                                                <  1:773743/60‑1
                                                                                                 TTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGAGCGCCCGTCGGCGCTGGC                                                                                                                >  2:773743/1‑60
                                                                                                                 GCCGAATGCATGGCCCGCGCCAGCGAGCGCCCGTCGGCGCTGGCGCGGGCCATGCATTCGGCCAGGCGCCGGTCGAAACCCTTGCTGTTGAGCAGGCCGGTGAGGTAGTCGGAGATGGTCTGTGCTTCCAGGCT                      <  1:333522/134‑1
                                                                                                                                 GCGCCAGCGAGCGCCCGTCGGCGCTGGCGCGGGCCATGCATTCGGCCAGGCGCCGGTCGAAACCCTTGCGGTTGAGCAGGCCGGTGAGGTAGTC                                              >  1:405037/1‑94
                                                                                                                                 GCGCCAGCGAGCGCCCGTCGGCGCTGGCGCGGGCCATGCATTCGGCCAGGCGCCGGTCGAAACCCTTGCGGTTGAGCAGGCCGGTGAGGTAGTC                                              <  2:405037/94‑1
                                                                                                                                     CAGCGAGCGCCCGTCGGCGCTGGCGCGGGCCATGCATTCGGCCAGGCGCCGGTCGAAACCCTTGCGGTTGAGCAGGCCGGTGAGGTAGTCGGAGATGGTCTGTGCTTCCAGGCTGCGCAGTTTTTCGCGCTCAT  <  2:319481/134‑1
                                                                                                                                      AGCGAGCGCCCGTCGGCGCTGGCGCGGGCCATGCATTCGGCCAGGCGCCGGTCGAAACCCTTGCGGTTGAGCAGGCCG                                                         <  1:457560/78‑1
                                                                                                                                      AGCGAGCGCCCGTCGGCGCTGGCGCGGGCCATGCATTCGGCCAGGCGCCGGTCGAAACCCTTGCGGTTGAGCAGGCCG                                                         >  2:457560/1‑78
                                                                                                                                                                                                                                                                           
TGTTCGGGCGCAATGTCACCCATGAGCGCGAAAAACTGCGCAGCCTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2712188‑2712325
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagcgAGCGCCCGTCGGCGCTGGCGCGGGCCATGCATTCGGCCAGGCGCCGGTCGAAACCCTTGCGGTTGAGCAGGCCGGTGAGGTAGTCGGAGATGGTCTGTGCTTCCAGGCTGCGCAGTTTTTCGCGCTCAT  <  AM260479/2712337‑2712209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.