New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2712325	25 (0.910)	6 (0.240)	6/196	1.5	20.0%	coding (1570/2022 nt)	h16_A2497	signal transduction protein
	?	AM260479	= 2712337	25 (1.000)					coding (1582/2022 nt)	h16_A2497	signal transduction protein

ATGAGCGCGAAAAACTGCGCAGCCTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGACAGCTTTGGCCATCCGGTGGGCGACCAGTTGCTGGTCGCCTTTGCGCAGCGGCTGCGCGCCT  >  AM260479/2712209‑2712448                                                                                                                                 |                                                                                                                aTGAGCGCGAAAAACTGCGCAGCCTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTcgctg                                                                                                            <  2:319481‑M2/134‑6 (MQ=255)              aCTGCGCAGCCTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCtgg                                                                                               <  1:874491/134‑1 (MQ=255)                  cgcAGCCTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCtggtg                                                                                             <  1:319481/132‑1 (MQ=255)                     aGCCTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACAGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTcgctggcgcgggccatgcattcggc                                                                                        <  1:333522‑M2/134‑26 (MQ=255)                                  aGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAg                                                                           <  2:772936/134‑1 (MQ=255)                                       aTCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTcgctggcgcgggccatgcattcggccaggcgccggtcgaaacc                                                                      >  2:333522‑M2/1‑91 (MQ=255)                                        tctcCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGt                                                                      >  1:689148/1‑133 (MQ=255)                                            cGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCa                                                                    <  1:977819/131‑1 (MQ=255)                                            cGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCa                                                                    <  2:689148/131‑1 (MQ=255)                                             gACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTcgctggcgc                                                                                                        >  1:405037‑M2/1‑85 (MQ=255)                                             gACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTcgctggcgc                                                                                                        <  2:405037‑M2/94‑10 (MQ=255)                                                      aCCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCt                                                                                        <  1:753280/101‑1 (MQ=255)                                                      aCCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCt                                                                                        >  2:753280/1‑101 (MQ=255)                                                      aCCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCa                                                                    <  1:536084/121‑1 (MQ=255)                                                      aCCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCa                                                                    >  2:536084/1‑121 (MQ=255)                                                       ccGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGAcc                                                                                         <  1:352753/99‑1 (MQ=255)                                                       ccGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGAcc                                                                                         >  2:352753/1‑99 (MQ=255)                                                        cGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTcgct                                                                                                             <  1:457560‑M2/78‑5 (MQ=255)                                                        cGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTcgct                                                                                                             >  2:457560‑M2/1‑74 (MQ=255)                                                           ccTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGACAGCTTTGGCCATc                                                  <  1:805067/134‑1 (MQ=255)                                                                   aCCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGACAGCTTTGGCCATCCGGTGGGc                                          >  1:807512/1‑134 (MQ=255)                                                                           ggTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGACAGCTTTGGCCATCCGGTGGGCGACCAGtt                                  >  2:651045/1‑134 (MQ=255)                                                                             tttCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGACAGCTTTGGCCATCCGGTGGGCGACCAGTTGc                                >  2:27395/1‑134 (MQ=255)                                                                                          cTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCt                                                                                        >  1:508991/1‑65 (MQ=255)                                                                                          cTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCt                                                                                        <  2:508991/65‑1 (MQ=255)                                                                                                 aaTGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGACAGCTTTGGCCATCCGGTGGGCGACCAGTTGCTGGTCGCCTTTGCGCAGCgg            <  1:220913/134‑1 (MQ=255)                                                                                                     cATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGgacgac                                                                                 <  2:182746/61‑1 (MQ=255)                                                                                                     cATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGgacgac                                                                                 >  1:182746/1‑61 (MQ=255)                                                                                                     cATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGACAGCTTTGGCCATCCGGTGGGCGACCAGTTGCTGGTCGCCTTTGCGCAGCGGCTgc        >  2:208314/1‑134 (MQ=255)                                                                                                     cATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGACAGCTTTGGCCATCCGGTGGGCGACCAGTTGCTGGTCGCCTTTGCGCAGCGGCTgc        >  2:752440/1‑134 (MQ=255)                                                                                                             gcgcCAGCGCCGACGGGCGCTcgctggcgcgggccatgcattcggccaggcgccggtcgaaacccttgcggttgagcaggccggtgaggtagtcggagatggtctgtgcttccaggctgcgcagtttttcgc  >  2:177945‑M2/1‑21 (MQ=255)                                                                                                             gcgcCAGCGCCGACGGGCGCTcgctggcgcgggccatgcattcggccaggcgccggtcgaaacccttgcggttgagcaggccggtgaggtagtcggagatggtctgtgcttccaggctgcgcagtttttcgc  <  1:177945‑M2/132‑112 (MQ=255)                                                                                                               gcCAGCGCCGACGGGCGCTcgctggcgcgggccatgcattcggccaggcgccggtcgaaa                                                                        <  1:773743‑M2/60‑42 (MQ=255)                                                                                                               gcCAGCGCCGACGGGCGCTcgctggcgcgggccatgcattcggccaggcgccggtcgaaa                                                                        >  2:773743‑M2/1‑19 (MQ=255)                                                                                                                        gACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGa                                                                <  2:324561/59‑1 (MQ=255)                                                                                                                        gACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGa                                                                >  1:324561/1‑59 (MQ=255)                                                                                                                                 |                                                                                                                ATGAGCGCGAAAAACTGCGCAGCCTGGAAGCACAGACCATCTCCGACTACCTCACCGGCCTGCTCAACCGCAAGGGTTTCGACCGGCGCCTGGCCGAATGCATGGCCCGCGCCAGCGCCGACGGGCGCTCGCTGGCGCTGCTGCTGGTGGACCTGGACGACTTCAAGGGCGTCAACGACAGCTTTGGCCATCCGGTGGGCGACCAGTTGCTGGTCGCCTTTGCGCAGCGGCTGCGCGCCT  >  AM260479/2712209‑2712448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.