| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 3399144–3400451 | 3400464 | 14–1321 | 24 [0] | [0] 24 | [leuS]–h16_A3140 | [leuS],h16_A3140 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 3399143 | NA (NA) | 23 (0.910) | 20/198 | 0.3 | NA | noncoding (2/1313 nt) | ISAE1 | insertion sequence ISAE1 |
| ? | AM260479 | 3400465 = | NA (NA) | intergenic (+32/+53) | h16_A3140/dapB | Transposase ISAE1/dihydrodipicolinate reductase | |||||
GGTCGGGACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3399015‑3399143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGG > AM260479/3400465‑3400594 GGTCGGGACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGAT > 1:1158586/1‑133 GACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACC > 2:128320/1‑134 CAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGT < 1:296190/134‑1 AGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTG < 2:1158586/134‑1 AGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAG > 2:77303/1‑134 CAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGC > 2:388939/1‑132 TTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA > 1:1068741/1‑99 TTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA < 2:1068741/99‑1 GCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGC > 1:352174/1‑134 GCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA < 2:95843/91‑1 GCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA > 1:95843/1‑91 GCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCC < 2:42700/134‑1 GCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCC < 2:352174/134‑1 CATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCA < 1:162654/100‑1 CATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCA > 2:162654/1‑100 AATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGC > 2:235654/1‑134 ATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCC < 1:77303/134‑1 GTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCA < 1:388939/133‑1 GAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACG < 1:235654/134‑1 GAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACG < 2:947773/134‑1 AATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA < 2:416535/56‑1 AATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA > 1:416535/1‑56 GCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCG < 1:608981/120‑1 GCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCG > 2:608981/1‑120 CGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTT > 2:427718/1‑134 gCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGG > 2:730918/2‑134 CCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTga > 1:1000579/1‑81 CCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTA < 2:1000579/83‑1 ATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGG < 1:730918/134‑1 AGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGG > 1:383711/1‑133 GGTCGGGACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3399015‑3399143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGG > AM260479/3400465‑3400594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |