Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AM260479 3,399,144 Δ1,321 bp [leuS]h16_A3140 [leuS], h16_A3140

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AM260479 3399144–3400451 3400464 14–1321 24 [0] [0] 24 [leuS]–h16_A3140 [leuS],h16_A3140

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 3399143NA (NA)23 (0.910) 20/198 0.3 NA noncoding (2/1313 nt) ISAE1 insertion sequence ISAE1
?AM260479 3400465 = NA (NA)intergenic (+32/+53) h16_A3140/dapB Transposase ISAE1/dihydrodipicolinate reductase

GGTCGGGACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/3399015‑3399143
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGG  >  AM260479/3400465‑3400594
                                                                                                                                                                                                                                                                   
GGTCGGGACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGAT                                                                                                                                >  1:1158586/1‑133
      GACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACC                                                                                                                         >  2:128320/1‑134
        CAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGT                                                                                                                       <  1:296190/134‑1
         AGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTG                                                                                                                      <  2:1158586/134‑1
                AGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAG                                                                                                               >  2:77303/1‑134
                    CAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGC                                                                                                             >  2:388939/1‑132
                         TTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA                                                                                                                                         >  1:1068741/1‑99
                         TTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA                                                                                                                                         <  2:1068741/99‑1
                            GCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGC                                                                                                   >  1:352174/1‑134
                                 GCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA                                                                                                                                         <  2:95843/91‑1
                                 GCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA                                                                                                                                         >  1:95843/1‑91
                                        GCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCC                                                                                       <  2:42700/134‑1
                                        GCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCC                                                                                       <  2:352174/134‑1
                                                 CATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCA                                                                                                                <  1:162654/100‑1
                                                 CATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCA                                                                                                                >  2:162654/1‑100
                                                           AATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGC                                                                    >  2:235654/1‑134
                                                            ATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCC                                                                   <  1:77303/134‑1
                                                               GTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCA                                                                 <  1:388939/133‑1
                                                                   GAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACG                                                            <  1:235654/134‑1
                                                                   GAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACG                                                            <  2:947773/134‑1
                                                                    AATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA                                                                                                                                         <  2:416535/56‑1
                                                                    AATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAA                                                                                                                                         >  1:416535/1‑56
                                                                                             GCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCG                                                <  1:608981/120‑1
                                                                                             GCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCG                                                >  2:608981/1‑120
                                                                                                CGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTT                               >  2:427718/1‑134
                                                                                                     gCCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGG                          >  2:730918/2‑134
                                                                                                      CCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTga                                                                            >  1:1000579/1‑81
                                                                                                      CCGCCGGGCGTGCAATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTA                                                                            <  2:1000579/83‑1
                                                                                                                    ATGCGAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGG           <  1:730918/134‑1
                                                                                                                              AGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGG  >  1:383711/1‑133
                                                                                                                                                                                                                                                                   
GGTCGGGACAGCAGTCAGGACAACGTTTGCGCGGCAACTGGCCTGCCGGCATCCGGGGGAATCGTTGGAATGAGAGCAGCGGGCGCGCCGCTTGCGCGGCGCCCGCCGGGCGTGCAATGCGAAAGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/3399015‑3399143
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGG  >  AM260479/3400465‑3400594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.