| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 3399144–3400451 | 3400464 | 14–1321 | 24 [0] | [0] 24 | [leuS]–h16_A3140 | [leuS],h16_A3140 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 3399143 | NA (NA) | 23 (0.910) | 20/198 | 0.3 | NA | noncoding (2/1313 nt) | ISAE1 | insertion sequence ISAE1 |
| ? | AM260479 | 3400465 = | NA (NA) | intergenic (+32/+53) | h16_A3140/dapB | Transposase ISAE1/dihydrodipicolinate reductase | |||||
AGGCCCGCGGTTATGTGAGCTTCAAAACCATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTCTCCGCGATCAACCCGCATGCCGCATAACCCACTCATTTTTCAAAAGAGCCAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGG > AM260479/3400336‑3400594 | ggtcgggacagcagtcaggacaacgtttgcgcggcaactggcctgccggcatccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGAt > 1:1158586‑M2/130‑133 (MQ=255) gacagcagtcaggacaacgtttgcgcggcaactggcctgccggcatccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAAcc > 2:128320‑M2/124‑134 (MQ=255) cagcagtcaggacaacgtttgcgcggcaactggcctgccggcatccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGt < 1:296190‑M2/13‑1 (MQ=255) agcagtcaggacaacgtttgcgcggcaactggcctgccggcatccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTg < 2:1158586‑M2/14‑1 (MQ=255) aggacaacgtttgcgcggcaactggcctgccggcatccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAg > 2:77303‑M2/114‑134 (MQ=255) caacgtttgcgcggcaactggcctgccggcatccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGc > 2:388939‑M2/110‑132 (MQ=255) gcgcggcaactggcctgccggcatccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGc > 1:352174‑M2/102‑134 (MQ=255) gcctgccggcatccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGcccc < 2:42700‑M2/45‑1 (MQ=255) gcctgccggcatccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGcccc < 2:352174‑M2/45‑1 (MQ=255) catccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCa > 2:162654‑M2/81‑100 (MQ=255) catccgggggaatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCa < 1:162654‑M2/20‑1 (MQ=255) aatcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGc > 2:235654‑M2/71‑134 (MQ=255) atcgttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGcc < 1:77303‑M2/65‑1 (MQ=255) gttggaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCa < 1:388939‑M2/67‑1 (MQ=255) gaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACg < 1:235654‑M2/72‑1 (MQ=255) gaatgagagcagcgggcgcgccgcttgcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACg < 2:947773‑M2/72‑1 (MQ=255) gcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCg < 1:608981‑M2/84‑1 (MQ=255) gcgcggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCg > 2:608981‑M2/37‑120 (MQ=255) cggcgcccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCtt > 2:427718‑M2/34‑134 (MQ=255) gccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCgg > 2:730918‑M2/29‑134 (MQ=255) ccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGcctga > 1:1000579‑M2/28‑81 (MQ=255) ccgccgggcgtgcaatgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTa < 2:1000579‑M2/56‑1 (MQ=255) atgcgaaagaagaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGggcgg < 1:730918‑M2/121‑1 (MQ=255) agaCGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACgg > 1:383711‑M2/4‑133 (MQ=255) | AGGCCCGCGGTTATGTGAGCTTCAAAACCATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTCTCCGCGATCAACCCGCATGCCGCATAACCCACTCATTTTTCAAAAGAGCCAAAGAAGACGATTATAACCGTGGCGGCAGGCCAGTTTCGGCCCTGCGCGCCCCGCGGCGCCTTACTTCAGGCCCAGCACGTCCTGCATGTCGAACAGGCCGTTGGGCTTGTCGGCGAGGAAACGGGCGGCGCGCACGG > AM260479/3400336‑3400594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |