| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 3618302 = | 20 (0.730) | 6 (0.240) | 4/196 | 2.0 | 26.5% | intergenic (+7/+418) | ubiX1/h16_A3345 | 3‑Polyprenyl‑4‑hydroxybenzoate decarboxylase/aldehyde dehydrogenase family |
| ? | AM260479 | 3618333 = | 15 (0.600) | intergenic (+38/+387) | ubiX1/h16_A3345 | 3‑Polyprenyl‑4‑hydroxybenzoate decarboxylase/aldehyde dehydrogenase family | |||||
TGGCACGACAATGCGCGAGGATGCCGGCGCGTAGAGAGAGGCTGCGCGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3618354‑3618302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgccggcATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATGGCCATAGTAGCCGCCATAGCCGCCGTAGTAGTACGGCCGCGGTGCCACCACCACCGGCGCG > AM260479/3618333‑3618461 TGGCACGACAATGCGCGAGGATGCCGGCGCGTAGAGAGAGGCTGCGCGC < 1:842591/49‑1TGGCACGACAATGCGCGAGGATGCCGGCGCGTAGAGAGAGGCTGCGCGC > 2:842591/1‑49 CGCGTAGAGAGAGGCTGCGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTA > 1:365251/1‑61 CGCGTAGAGAGAGGCTGCGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTA > 1:712172/1‑61 CGCGTAGAGAGAGGCTGCGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTA < 2:365251/61‑1 CGCGTAGAGAGAGGCTGCGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTA < 2:712172/61‑1 CGTAGAGAGAGGCTGCGCGCCGGCATCCTCGCGCATTGTCGTGCCA < 1:264797/46‑1 CGTAGAGAGAGGCTGCGCGCCGGCATCCTCGCGCATTGTCGTGCCA > 2:264797/1‑46 CCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATGGCCATAGTAGCCGCCATAGCCGCCGTAGTAGTACGGCCGCGGTGCCACCACCACCGGCGCG > 2:790836/1‑134 CCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATG < 1:1017672/73‑1 CCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATG > 2:1017672/1‑73 TGGCACGACAATGCGCGAGGATGCCGGCGCGTAGAGAGAGGCTGCGCGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3618354‑3618302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgccggcATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATGGCCATAGTAGCCGCCATAGCCGCCGTAGTAGTACGGCCGCGGTGCCACCACCACCGGCGCG > AM260479/3618333‑3618461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |