New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3618302 =	20 (0.730)	6 (0.240)	4/196	2.0	26.5%	intergenic (+7/+418)	ubiX1/h16_A3345	3‑Polyprenyl‑4‑hydroxybenzoate decarboxylase/aldehyde dehydrogenase family
	?	AM260479	3618333 =	15 (0.600)					intergenic (+38/+387)	ubiX1/h16_A3345	3‑Polyprenyl‑4‑hydroxybenzoate decarboxylase/aldehyde dehydrogenase family

TCGACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATGGCCATAGTAGCCGCCATAGCCGCCGTAGTAGTACGGCCGCGGTGCCACCACCACCGGCGCG  >  AM260479/3618204‑3618461                                                                                                                                  |                                                                                                                                 tCGACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCt                                                                                                                              >  2:211555/1‑134 (MQ=255)   gACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTcg                                                                                                                            >  2:655885/1‑134 (MQ=255)       tggtggATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTcg                                                                                                                            >  1:101955/1‑130 (MQ=255)       tggtggATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTcg                                                                                                                            <  2:101955/130‑1 (MQ=255)                    ggAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAAc                                                                                                           <  2:446728/134‑1 (MQ=255)                                    cTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAgc                                                                                           >  1:618875/1‑134 (MQ=255)                                       gcgcCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAgcggc                                                                                        <  2:618875/134‑1 (MQ=255)                                         gcCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGcggcgg                                                                                      <  1:698706/134‑1 (MQ=255)                                          cccAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGt                                                                                     <  1:756918/134‑1 (MQ=255)                                           ccAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTa                                                                                    <  1:655885/134‑1 (MQ=255)                                                         cTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCAtagt                                                                      <  1:239245/134‑1 (MQ=255)                                                         cTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCAtagt                                                                      <  1:47457/134‑1 (MQ=255)                                                         cTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCAtagt                                                                      <  2:352878/134‑1 (MQ=255)                                                         cTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCAtagt                                                                      <  2:263196/134‑1 (MQ=255)                                                                                ggccggcAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATGGCCATAGTAGCCGCCa                                               <  1:211555/134‑1 (MQ=255)                                                                                                       GCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCa                                                                                                             >  2:842591‑M1/1‑49 (MQ=255)                                                                                                       GCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCa                                                                                                             <  1:842591‑M1/49‑1 (MQ=255)                                                                                                        cgcgtagagagaggctgcgcgccggcATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTa                                                                                                <  2:365251‑M2/35‑1 (MQ=255)                                                                                                        cgcgtagagagaggctgcgcgccggcATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTa                                                                                                >  1:712172‑M2/27‑61 (MQ=255)                                                                                                        cgcgtagagagaggctgcgcgccggcATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTa                                                                                                >  1:365251‑M2/27‑61 (MQ=255)                                                                                                        cgcgtagagagaggctgcgcgccggcATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTa                                                                                                <  2:712172‑M2/35‑1 (MQ=255)                                                                                                          cgtagagagaggctgcgcgccggcATCCTCGCGCATTGTCGTGCCa                                                                                                             >  2:264797‑M2/25‑46 (MQ=255)                                                                                                          cgtagagagaggctgcgcgccggcATCCTCGCGCATTGTCGTGCCa                                                                                                             <  1:264797‑M2/22‑1 (MQ=255)                                                                                                                             ccggcATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATg                                                               >  2:1017672‑M2/6‑73 (MQ=255)                                                                                                                             ccggcATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATg                                                               <  1:1017672‑M2/68‑1 (MQ=255)                                                                                                                             ccggcATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATGGCCATAGTAGCCGCCATAGCCGCCGTAGTAGTACGGCCGCGGTGCCACCACCACCGGcgcg  >  2:790836‑M2/6‑134 (MQ=255)                                                                                                                                  |                                                                                                                                 TCGACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATGGCCATAGTAGCCGCCATAGCCGCCGTAGTAGTACGGCCGCGGTGCCACCACCACCGGCGCG  >  AM260479/3618204‑3618461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.