New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 3618302 =20 (0.730)6 (0.240) 4/196 2.0 26.5% intergenic (+7/+418) ubiX1/h16_A3345 3‑Polyprenyl‑4‑hydroxybenzoate decarboxylase/aldehyde dehydrogenase family
?AM260479 3618333 = 15 (0.600)intergenic (+38/+387) ubiX1/h16_A3345 3‑Polyprenyl‑4‑hydroxybenzoate decarboxylase/aldehyde dehydrogenase family

GAACTGGTCGACCATACGGTCGGGCGCGTGCTCGACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATGGCCATAGTAGCCGCCA  >  AM260479/3618173‑3618416
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cgcgccggtggtggtggcaccgcggccgtactactacggcggctatggcggctactatggccatggctactatggccggggctaccgccgctggtaatgagcgcggttggcacgacaatgcgcgaggatGCCgg                                                                                                                >  2:790836‑M1/130‑134 (MQ=255)
       tCGACCATACGGTCGGGCGCGTGCTCGACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGcggccgg                                                                                                                >  2:725111/1‑127 (MQ=255)
       tCGACCATACGGTCGGGCGCGTGCTCGACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGcggccgg                                                                                                                <  1:725111/127‑1 (MQ=255)
              tACGGTCGGGCGCGTGCTCGACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCctctct                                                                                                  <  2:365529/134‑1 (MQ=255)
                               tCGACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCt                                                                                 >  2:211555/1‑134 (MQ=255)
                                 gACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTcg                                                                               >  2:655885/1‑134 (MQ=255)
                                     tggtggATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTcg                                                                               >  1:101955/1‑130 (MQ=255)
                                     tggtggATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTcg                                                                               <  2:101955/130‑1 (MQ=255)
                                                  ggAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAAc                                                              <  2:446728/134‑1 (MQ=255)
                                                             catggctactatggccggggctaccgccgctggtaatgagcgcggttggcacgacaatgcgcgaggatGCCgg                                                                                                                <  1:1017672‑M1/5‑1 (MQ=255)
                                                             catggctactatggccggggctaccgccgctggtaatgagcgcggttggcacgacaatgcgcgaggatGCCgg                                                                                                                >  2:1017672‑M1/69‑73 (MQ=255)
                                                                  cTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAgc                                              >  1:618875/1‑134 (MQ=255)
                                                                     gcgcCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAgcggc                                           <  2:618875/134‑1 (MQ=255)
                                                                       gcCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGcggcgg                                         <  1:698706/134‑1 (MQ=255)
                                                                        cccAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGt                                        <  1:756918/134‑1 (MQ=255)
                                                                         ccAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTa                                       <  1:655885/134‑1 (MQ=255)
                                                                                       cTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCAtagt                         <  2:263196/134‑1 (MQ=255)
                                                                                       cTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCAtagt                         <  2:352878/134‑1 (MQ=255)
                                                                                       cTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCAtagt                         <  1:239245/134‑1 (MQ=255)
                                                                                       cTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCAtagt                         <  1:47457/134‑1 (MQ=255)
                                                                                              taatgagcgcggttggcacgacaatgcgcgaggatGCCGGCGCGCAGCCTCTCTCTAcgcg                                                                                           <  2:365251‑M1/26‑1 (MQ=255)
                                                                                              taatgagcgcggttggcacgacaatgcgcgaggatGCCGGCGCGCAGCCTCTCTCTAcgcg                                                                                           >  1:365251‑M1/36‑61 (MQ=255)
                                                                                              taatgagcgcggttggcacgacaatgcgcgaggatGCCGGCGCGCAGCCTCTCTCTAcgcg                                                                                           <  2:712172‑M1/26‑1 (MQ=255)
                                                                                              taatgagcgcggttggcacgacaatgcgcgaggatGCCGGCGCGCAGCCTCTCTCTAcgcg                                                                                           >  1:712172‑M1/36‑61 (MQ=255)
                                                                                              cccGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGc                                                                                      <  2:171540/66‑1 (MQ=255)
                                                                                              cccGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGc                                                                                      >  1:171540/1‑66 (MQ=255)
                                                                                                           tggcacgacaatgcgcgaggatGCCGGCGCGCAGCCTCTCTCTAcg                                                                                             <  1:264797‑M1/24‑1 (MQ=255)
                                                                                                           tggcacgacaatgcgcgaggatGCCGGCGCGCAGCCTCTCTCTAcg                                                                                             >  2:264797‑M1/23‑46 (MQ=255)
                                                                                                              ggccggcAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATGGCCATAGTAGCCGCCa  <  1:211555/134‑1 (MQ=255)
                                                                                                                                 |                                                                                                                  
GAACTGGTCGACCATACGGTCGGGCGCGTGCTCGACCTGGTGGATTTGCCGGAGATCGGCCAGACGCTCGCGCCCAGCTGGGGCGGGCTGAACGCCCGGGCCGGCGACGCGGCCGGCAACTGAACTGCGGCCGGCGCGCAGCCTCTCTCTACGCGCCGGCATCCTCGCGCATTGTCGTGCCAACCGCGCTCATTACCAGCGGCGGTAGCCCCGGCCATAGTAGCCATGGCCATAGTAGCCGCCA  >  AM260479/3618173‑3618416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.