New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	1718541 =	12 (0.360)	3 (0.100)	3/198	2.8	22.1%	coding (24/282 nt)	h16_B1530	Hypothetical protein
	?	AM260480	1718591 =	10 (0.330)					coding (74/282 nt)	h16_B1530	Hypothetical protein

CGGTTCGGTCACCGAACAGAGCCGCAGCCGCAGCAGCACCCCTAGCTCAAGCACTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1718679‑1718541 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgggcTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAG  >  AM260480/1718591‑1718638                                                                                                                                                                                             CGGTTCGGTCACCGAACAGAGCCGCAGCCGCAGCAGCACCCCTAGCTCAAGCACTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCT                                                       <  1:624289/134‑1   GTTCGGTCACCGAACAGAGCCGCAGCCGCAGCAGCACCCCTAGCTCAAGCACTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCG                                                     <  1:262611/134‑1   GTTCGGTCACCGAACAGAGCCGCAGCCGCAGCAGCACCCCTAGCTCAAGCACTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCG                                                     >  2:580947/1‑134                                                      CTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAG  <  1:456598/134‑1                                                                                                         CCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTG        >  1:183894/1‑77                                                                                                         CCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTG        <  2:183894/77‑1                                                                                                                                                                                             CGGTTCGGTCACCGAACAGAGCCGCAGCCGCAGCAGCACCCCTAGCTCAAGCACTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1718679‑1718541 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgggcTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAG  >  AM260480/1718591‑1718638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.