New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 1718541 =12 (0.360)3 (0.100) 3/198 2.8 22.1% coding (24/282 nt) h16_B1530 Hypothetical protein
?AM260480 1718591 = 10 (0.330)coding (74/282 nt) h16_B1530 Hypothetical protein

CGGTTCGGTCACCGAACAGAGCCGCAGCCGCAGCAGCACCCCTAGCTCAAGCACTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1718679‑1718541
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgggcTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAG  >  AM260480/1718591‑1718638
                                                                                                                                                                                           
CGGTTCGGTCACCGAACAGAGCCGCAGCCGCAGCAGCACCCCTAGCTCAAGCACTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCT                                                       <  1:624289/134‑1
  GTTCGGTCACCGAACAGAGCCGCAGCCGCAGCAGCACCCCTAGCTCAAGCACTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCG                                                     <  1:262611/134‑1
  GTTCGGTCACCGAACAGAGCCGCAGCCGCAGCAGCACCCCTAGCTCAAGCACTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCG                                                     >  2:580947/1‑134
                                                     CTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAG  <  1:456598/134‑1
                                                                                                        CCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTG        >  1:183894/1‑77
                                                                                                        CCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTG        <  2:183894/77‑1
                                                                                                                                                                                           
CGGTTCGGTCACCGAACAGAGCCGCAGCCGCAGCAGCACCCCTAGCTCAAGCACTTCTACCGGCACGTCCGGCGCCACCAGCACGACCAGCCCGAGCGGCACCTCCAGCGGCAGCAGCGGTGCAGCCAGCGGCTCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1718679‑1718541
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgggcTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAG  >  AM260480/1718591‑1718638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.