New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 1718541 =12 (0.360)3 (0.100) 3/198 2.8 22.1% coding (24/282 nt) h16_B1530 Hypothetical protein
?AM260480 1718591 = 10 (0.330)coding (74/282 nt) h16_B1530 Hypothetical protein

ACCGATAGCGAAGCCGCGCAGCCGCCGGTGCCAGGCCACCGGCGGCTGTGCGCCGGCGTCAGCGGGCAGTGCCCGAGCCGCTGGCTGCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTGCTGCGGCTGCGGCTCTGTTCGGTGACCGAACCGGCGCCGGACAGCGAGCCAGAGCCGGTGGT  >  AM260480/1718471‑1718708
                                                                                                                        |                                                                                                                     
aCCGATAGCGAAGCCGCGCAGCCGCCGGTGCCAGGCCACCGGCGGCTGTGCGCCGGCGTCAGCGGGCAGTGCCCGAGCCGCTGGCTGCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCtggtt                                                                                                          >  1:580947/1‑133 (MQ=255)
                      ctagctcaagcacttctaccggcacgtccggcgccaccagcacgaccaGCCCGAGCCGCTGGCTGCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAg                                                                                    <  1:456598‑M1/86‑1 (MQ=255)
                      cgccgGTGCCAGGCCACCGGCGGCTGTGCGCCGGCGTCAGCGGGCAGTGCCCGAGCCGCTGGCTGCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAg                                                                                    <  2:430464/134‑1 (MQ=255)
                      cgccgGTGCCAGGCCACCGGCGGCTGTGCGCCGGCGTCAGCGGGCAGTGCCCGAGCCGCTGGCTGCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAg                                                                                    <  1:727510/134‑1 (MQ=255)
                                  cttctaccggcacgtccggcgccaccagcacgaccagcccgagcggcacctccagcggcagcagcggtgcagccagcggctcgggcTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAg                                                                        <  1:456598‑M2/48‑1 (MQ=255)
                                                                         CGAGCCGCTGGCTGCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTGCTGCGGCTGCGGCTCTGTTCGGTGACCGAAc                                 >  2:580947‑M1/1‑134 (MQ=255)
                                                                         CGAGCCGCTGGCTGCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTGCTGCGGCTGCGGCTCTGTTCGGTGACCGAAc                                 <  1:262611‑M1/134‑1 (MQ=255)
                                                                           AGCCGCTGGCTGCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTGCTGCGGCTGCGGCTCTGTTCGGTGACCGAACCg                               <  1:624289‑M1/134‑1 (MQ=255)
                                                                               gctggctgCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTgctgcg                                                           <  2:882687/102‑1 (MQ=255)
                                                                               gctggctgCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTgctgcg                                                           >  1:882687/1‑102 (MQ=255)
                                                                                     tgCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTGCTGCGGCTGCGGCTCTGTTCGGTGACCGAACCGGCGCCGGa                       >  1:65228/1‑132 (MQ=255)
                                                                                     ccagcggcagcagcggtgcagccagcggctcgggcTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTg                                                                              <  2:183894‑M2/42‑1 (MQ=255)
                                                                                     ccagcggcagcagcggtgcagccagcggctcgggcTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTg                                                                              >  1:183894‑M2/36‑77 (MQ=255)
                                                                                         ccGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTGCTGCGGCTGCGGCTCTGTTCGGTGACCGAACCGGCGCCGGACAGCGa                 <  2:624289/134‑1 (MQ=255)
                                                                                                tgcCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTGCTGCGGCTGCGGCTCTGTTCGGTGACCGAACCGGCGCCGGACAGCGAGCCagag          >  1:169206/1‑134 (MQ=255)
                                                                                                     cTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTGCTGCGGCTGCGGCTCTGTTCGGTGACCGAACCGGCGCCGGACAGCGAGCCAGAGCCggt     <  2:169206/134‑1 (MQ=255)
                                                                                                        gAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTGCTGCGGCTGCGGCTCTGTTCGGTGACCGAACCGGCGCCGGACAGCGAGCCAGAGCCggtggt  >  2:68737/1‑134 (MQ=255)
                                                                                                                        |                                                                                                                     
ACCGATAGCGAAGCCGCGCAGCCGCCGGTGCCAGGCCACCGGCGGCTGTGCGCCGGCGTCAGCGGGCAGTGCCCGAGCCGCTGGCTGCACCGCTGCTGCCGCTGGAGGTGCCGCTCGGGCTGGTCGTGCTGGTGGCGCCGGACGTGCCGGTAGAAGTGCTTGAGCTAGGGGTGCTGCTGCGGCTGCGGCTCTGTTCGGTGACCGAACCGGCGCCGGACAGCGAGCCAGAGCCGGTGGT  >  AM260480/1718471‑1718708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.