New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AY305378	= 67604	8 (0.370)	4 (0.200)	4/200	1.6	32.7%	coding (652/2391 nt)	hypF3	HypF3
	?	AY305378	= 67623	9 (0.450)					coding (671/2391 nt)	hypF3	HypF3

GAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AY305378/67505‑67604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatcgCAGGCCAACTGGAACCCGCCGATGCCCTTGATGG  <  AY305378/67623‑67590                                                                                                                                        GAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGCAGGCCAACTGGAACCCGCCGATGCCCTTGATGG  >  1:481101/1‑134 GAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGCAGGCCAACTGGAACCCGCCGATGCCCTTGAT    <  2:481101/132‑1                   CTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCA                                       <  1:1116533/79‑1                   CTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCA                                       >  2:1116533/1‑79                                                                       ACGGCGGGATCGTCGCCATCAAGGGCATCGCAGGCCAACTGGAACCCGCCGAT             <  1:1046441/53‑1                                                                       ACGGCGGGATCGTCGCCATCAAGGGCATCGCAGGCCAACTGGAACCCGCCGAT             >  2:1046441/1‑53                                                                                                                                        GAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AY305378/67505‑67604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatcgCAGGCCAACTGGAACCCGCCGATGCCCTTGATGG  <  AY305378/67623‑67590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.