New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AY305378 = 676048 (0.370)4 (0.200) 4/200 1.6 32.7% coding (652/2391 nt) hypF3 HypF3
?AY305378 = 67623 9 (0.450)coding (671/2391 nt) hypF3 HypF3

GAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AY305378/67505‑67604
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatcgCAGGCCAACTGGAACCCGCCGATGCCCTTGATGG  <  AY305378/67623‑67590
                                                                                                                                      
GAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGCAGGCCAACTGGAACCCGCCGATGCCCTTGATGG  >  1:481101/1‑134
GAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGCAGGCCAACTGGAACCCGCCGATGCCCTTGAT    <  2:481101/132‑1
                  CTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCA                                       <  1:1116533/79‑1
                  CTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCA                                       >  2:1116533/1‑79
                                                                      ACGGCGGGATCGTCGCCATCAAGGGCATCGCAGGCCAACTGGAACCCGCCGAT             <  1:1046441/53‑1
                                                                      ACGGCGGGATCGTCGCCATCAAGGGCATCGCAGGCCAACTGGAACCCGCCGAT             >  2:1046441/1‑53
                                                                                                                                      
GAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AY305378/67505‑67604
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatcgCAGGCCAACTGGAACCCGCCGATGCCCTTGATGG  <  AY305378/67623‑67590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.