New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AY305378	= 67604	8 (0.370)	4 (0.200)	4/200	1.6	32.7%	coding (652/2391 nt)	hypF3	HypF3
	?	AY305378	= 67623	9 (0.450)					coding (671/2391 nt)	hypF3	HypF3

GTGGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCCGACCG  >  AY305378/67498‑67742                                                                                                                              |                                                                                                                        gtgGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCt                                                                                                                 >  1:621281/1‑134 (MQ=255)                                                 gATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAgc                                                                 <  2:621281/134‑1 (MQ=255)                                                                                    ggATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCg                              <  2:537082/134‑1 (MQ=255)                                                                                             ccATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgtcgcgcaggagcgcccacgccgcgcggatcgcgtcgtctgggccggcggccagcggcccgcctgtgtgctc                     >  1:481101‑M2/1‑34 (MQ=255)                                                                                               aTCAAGGGCATCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgtcgcgcaggagcgcccacgccgcgcggatcgcgtcgtctgggccggcggccagcggcccgcctgtgtgctc                     <  2:481101‑M2/132‑101 (MQ=255)                                                                                               aTCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAgc                                                                          >  1:493316/1‑79 (MQ=255)                                                                                               aTCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAgc                                                                          <  2:493316/79‑1 (MQ=255)                                                                                                        aTCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgt                                                                                           <  1:1046441‑M2/53‑31 (MQ=255)                                                                                                        aTCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgt                                                                                           >  2:1046441‑M2/1‑23 (MQ=255)                                                                                                           ggcggGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGcc       >  1:336411/1‑134 (MQ=255)                                                                                                            gcggGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCCg      <  2:199059/134‑1 (MQ=255)                                                                                                                gTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCCGACcg  >  1:490478/1‑134 (MQ=255)                                                                                                                gTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCCGACcg  <  1:756547/134‑1 (MQ=255)                                                                                                                              |                                                                                                                        GTGGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCCGACCG  >  AY305378/67498‑67742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.