New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AY305378 = 676048 (0.370)4 (0.200) 4/200 1.6 32.7% coding (652/2391 nt) hypF3 HypF3
?AY305378 = 67623 9 (0.450)coding (671/2391 nt) hypF3 HypF3

GTGGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCCGACCG  >  AY305378/67498‑67742
                                                                                                                             |                                                                                                                       
gtgGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCt                                                                                                                 >  1:621281/1‑134 (MQ=255)
                                                gATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAgc                                                                 <  2:621281/134‑1 (MQ=255)
                                                                                   ggATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCg                              <  2:537082/134‑1 (MQ=255)
                                                                                            ccATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgtcgcgcaggagcgcccacgccgcgcggatcgcgtcgtctgggccggcggccagcggcccgcctgtgtgctc                     >  1:481101‑M2/1‑34 (MQ=255)
                                                                                              aTCAAGGGCATCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgtcgcgcaggagcgcccacgccgcgcggatcgcgtcgtctgggccggcggccagcggcccgcctgtgtgctc                     <  2:481101‑M2/132‑101 (MQ=255)
                                                                                              aTCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAgc                                                                          >  1:493316/1‑79 (MQ=255)
                                                                                              aTCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAgc                                                                          <  2:493316/79‑1 (MQ=255)
                                                                                                       aTCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgt                                                                                           <  1:1046441‑M2/53‑31 (MQ=255)
                                                                                                       aTCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgt                                                                                           >  2:1046441‑M2/1‑23 (MQ=255)
                                                                                                          ggcggGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGcc       >  1:336411/1‑134 (MQ=255)
                                                                                                           gcggGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCCg      <  2:199059/134‑1 (MQ=255)
                                                                                                               gTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCCGACcg  >  1:490478/1‑134 (MQ=255)
                                                                                                               gTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCCGACcg  <  1:756547/134‑1 (MQ=255)
                                                                                                                             |                                                                                                                       
GTGGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCCGACCG  >  AY305378/67498‑67742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.