| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AY305378 | = 67604 | 8 (0.370) | 4 (0.200) | 4/200 | 1.6 | 32.7% | coding (652/2391 nt) | hypF3 | HypF3 |
| ? | AY305378 | = 67623 | 9 (0.450) | coding (671/2391 nt) | hypF3 | HypF3 | |||||
GCGGCCTGCGGACCCCACGTGTGGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCC > AY305378/67478‑67737 | gcgGCCTGCGGACCCCACGTGTGGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGtt < 1:308512/134‑1 (MQ=255) gACCCCACGTGTGGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGcc < 1:227067/134‑1 (MQ=255) gtgGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCt > 1:621281/1‑134 (MQ=255) gAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGcaggccaactggaacccgccgatgcccttgatgg > 1:481101‑M1/1‑100 (MQ=255) gAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGcaggccaactggaacccgccgatgcccttgat < 2:481101‑M1/132‑33 (MQ=255) gATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAgc < 2:621281/134‑1 (MQ=255) aCGGCGGGATCGTCGCCATCAAGGGCATCGcaggccaactggaacccgccgat < 1:1046441‑M1/53‑24 (MQ=255) aCGGCGGGATCGTCGCCATCAAGGGCATCGcaggccaactggaacccgccgat > 2:1046441‑M1/1‑30 (MQ=255) ggATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCg < 2:537082/134‑1 (MQ=255) ccATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgtcgcgcaggagcgcccacgccgcgcggatcgcgtcgtctgggccggcggccagcggcccgcctgtgtgctc > 1:481101‑M2/1‑34 (MQ=255) aTCAAGGGCATCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgtcgcgcaggagcgcccacgccgcgcggatcgcgtcgtctgggccggcggccagcggcccgcctgtgtgctc < 2:481101‑M2/132‑101 (MQ=255) aTCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAgc > 1:493316/1‑79 (MQ=255) aTCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAgc < 2:493316/79‑1 (MQ=255) aTCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgt < 1:1046441‑M2/53‑31 (MQ=255) aTCGGCGGGTTCCAGTTGGCCTGcgatgcccttgatggcgacgatcccgccgt > 2:1046441‑M2/1‑23 (MQ=255) ggcggGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGcc > 1:336411/1‑134 (MQ=255) | GCGGCCTGCGGACCCCACGTGTGGCTCGAGCACACAGGCGGGCCGCTGGCCGCCGGCCCAGACGACGCGATCCGCGCGGCGTGGGCGCTCCTGCGCGACGGCGGGATCGTCGCCATCAAGGGCATCGGCGGGTTCCAGTTGGCCTGCGATGCCTGCAACCCCGTGGCGGTGGCGCGCCTGCGCCAGCGCAAGCGGCGCGAGCGCAAGCCGTTCGCACTGATGGCGCGCGACCTGGCGGTGATCCGCCAATACAGCGAGCC > AY305378/67478‑67737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |