New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2609256 =	14 (0.510)	6 (0.240)	4/198	2.0	28.6%	coding (206/852 nt)	h16_A2396	protein of unknown function
	?	AM260479	2609283 =	17 (0.670)					coding (233/852 nt)	h16_A2396	protein of unknown function

CGCTACGGCAGCGAAGACCTGGCGGCGCTGCGCGAACTGGCCACGCTGTTCATCGCCGACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGCTCTACCCGGGCGAGTTCATCATCCGCCGGACCGTGCAGGACGAGATCGGCCTAGTGCACGGC  >  AM260479/2609168‑2609416                                                                                                                    |                                                                                                                                      cgcTACGGCAGCGAAGACCTGGCGGCGCTGCGCGAACTGGCCACGCTGTTCATCGCCGACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGt                                                                                                                     >  2:716057/1‑134 (MQ=255)       ggCAGCGAAGACCTGGCGGCGCTGCGCGAACTGGCCACGCTGTTCATCGCCGACAAGGAAGACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGAt                                                                                                               >  2:1055903/1‑134 (MQ=255)            cGAAGACCTGGCGGCGCTGCGCGAACTGGCCACGCTGTTCATCGCCGACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGa                                                                                                          <  1:1055903/134‑1 (MQ=255)               gagcacgatgccgtgccagccccggtaccaaggcagccccagcttcaggatcggcacgcaggcctgcgcggcaacgctggccaccatgtcgtcggccagcgTTGGCGTGCAGGCCTGCGTGCCGATCCTGAAGc                                                                                                       >  2:693952‑M2/102‑134 (MQ=255)               gagcacgatgccgtgccagccccggtaccaaggcagccccagcttcaggatcggcacgcaggcctgcacggcaacgctggccaccatgtcgtcggccagcgTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGc                                                                                                       >  2:1128265‑M2/102‑134 (MQ=255)                 gcacgatgccgtgccagccccggtaccaaggcagccccagcttcaggatcggcacgcaggcctgcacggcaacgctggccaccatgtcgtcggccagcgTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTg                                                                                                     <  1:1128265‑M2/35‑1 (MQ=255)                 gcacgatgccgtgccagccccggtaccaaggcagccccagcttcaggatcggcacgcaggactgcacggcaacgctggccaccatgtcgtcggccagcgTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTg                                                                                                     <  1:693952‑M2/35‑1 (MQ=255)                 aCCTGGCGGCGCTGCGCGAACTGGCCACGCTGTTCATCGCCGACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTg                                                                                                     <  1:716057/134‑1 (MQ=255)                      gcggcgCTGCGCGAACTGGCCACGCTGTTCATCGCCGACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCt                                                                                                <  1:313834/134‑1 (MQ=255)                         gcgcTGCGCGAACTGGCCACGCTGTTCATCGCCGACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGcc                                                                                             >  1:589123/1‑134 (MQ=255)                                     cggtaccaaggcagccccagcttcaggatcggcacgcaggcctgcacggcaacgctggccaccatgtcgtcggccagcgTTGCCGTGCAGGCCTGCGTGcc                                                                                                                  <  2:716417‑M2/22‑1 (MQ=255)                                     cggtaccaaggcagccccagcttcaggatcggcacgcaggcctgcacggcaacgctggccaccatgtcgtcggccagcgTTGCCGTGCAGGCCTGCGTGcc                                                                                                                  >  1:716417‑M2/80‑101 (MQ=255)                                             gCTGTTCATCGCCGACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCt                                                                               <  2:904497/128‑1 (MQ=255)                                             gCTGTTCATCGCCGACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCt                                                                               >  1:904497/1‑128 (MQ=255)                                                      cagcttcaggatcggcacgcaggcctgcacggcaaCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGTCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGc                                                                <  1:693952‑M1/99‑1 (MQ=255)                                                      cagcttcaggatcggcacgcaggcctgcacggcaaCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGc                                                                <  1:1128265‑M1/99‑1 (MQ=255)                                                        gcttcaggatcggcacgcaggcctgcacggcaaCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGctc                                                              >  2:1128265‑M1/34‑134 (MQ=255)                                                        gcttcaggatcggcacgcaggcctgcacgccaaCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGCGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGctc                                                              >  2:693952‑M1/34‑134 (MQ=255)                                                          gACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGTCTGCGTGCCGa                                                                                                                <  1:1080051/82‑1 (MQ=255)                                                          gACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGTCTGCGTGCCGa                                                                                                                >  2:1080051/1‑82 (MQ=255)                                                               ggAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGCTCTACCCgg                                                       >  1:144129/1‑134 (MQ=255)                                                                   ggcacgcaggcctgcacggcaaCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCg                                                                                    >  1:716417‑M1/23‑101 (MQ=255)                                                                   ggcacgcaggcctgcacggcaaCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCg                                                                                    <  2:716417‑M1/79‑1 (MQ=255)                                                                                aCGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGCTCTACCCGGGCGAGTTCATCATccgc                                      <  2:144129/134‑1 (MQ=255)                                                                                      tGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGCTCTACCCGGGCGAGTTCATCATCCGCCGGAcc                                >  2:753731/1‑134 (MQ=255)                                                                                           CTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGCTCTACCCGGGCGAGTTCATCATCCGCCGGACCGTg                             <  1:631259‑M1/132‑1 (MQ=255)                                                                                            TGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCT‑GGTACCGGGGCTGGCACGGCATCGTGCTCTACCCGGGCGAGTTCATCATCCGCCGGACCGTGCAg                          <  2:826509‑M1/133‑1 (MQ=255)                                                                                                  acgacATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGCTCTACCCGGGCGAGtt                                                <  1:928810/106‑1 (MQ=255)                                                                                                  acgacATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGCTCTACCCGGGCGAGtt                                                >  2:928810/1‑106 (MQ=255)                                                                                                         ggtggCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTg                                                                                                     <  2:294268/46‑1 (MQ=255)                                                                                                         ggtggCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTg                                                                                                     >  1:294268/1‑46 (MQ=255)                                                                                                                  cgTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGCTCTACCCGGGCGAGTTCATCATCCGCCGGACCGTGCAGGACGAGATCGGCCTAGTGCACg    >  2:637997‑M2/3‑134 (MQ=255)                                                                                                                    ttGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGCTCTACCCGGGCGAGTTCATCATCCGCCGGACCGTGCAGGACGAGATCGGCCTAGTGCACGGc  >  2:266259/1‑134 (MQ=255)                                                                                                                    |                                                                                                                                      CGCTACGGCAGCGAAGACCTGGCGGCGCTGCGCGAACTGGCCACGCTGTTCATCGCCGACAAGGAATACTCCACCGCGCACGACCTGCCGCTGGCCGACGACATGGTGGCCAGCGTTGCCGTGCAGGCCTGCGTGCCGATCCTGAAGCTGGGGCTGCCTTGGTACCGGGGCTGGCACGGCATCGTGCTCTACCCGGGCGAGTTCATCATCCGCCGGACCGTGCAGGACGAGATCGGCCTAGTGCACGGC  >  AM260479/2609168‑2609416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.