| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 330490 | 16 (0.620) | 4 (0.170) | 4/196 | 1.8 | 26.1% | coding (1408/2553 nt) | nagF | Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC |
| ? | AM260479 | = 330641 | 8 (0.340) | coding (1559/2553 nt) | nagF | Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC | |||||
GGGTTGCCGCACTGGTGATGGCGCGCGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/330458‑330490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggccAGCAAATGCGCATCGGGGCAGGCGTGCAGGCGGGCGCTGTCGCCGTCGGCGATGACCGGCGTGCCGTCCTGCAGGCGC < AM260479/330641‑330564 GGGTTGCCGCACTGGTGATGGCGCGCGGCGGCCAGCAAATGCGCATCGGG > 1:581217/1‑50GGGTTGCCGCACTGGTGATGGCGCGCGGCGGCCAGCAAATGCGCATCGGG < 2:581217/50‑1 ACTGGTGATGGCGCGCGGCGGCCAGCAAATGCGCATCGGGGCAGGCGTGCAGGCGGGCGCTGTCGCCGTCGGCGATGACCGGCGTGCCGTCCTGCAGGCGC < 1:204522/101‑1 ACTGGTGATGGCGCGCGGCGGCCAGCAAATGCGCATCGGGGCAGGCGTGCAGGCGGGCGCTGTCGCCGTCGGCGATGACCGGCGTGCCGTCCTGCAGGCGC > 2:204522/1‑101 GGGTTGCCGCACTGGTGATGGCGCGCGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/330458‑330490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggccAGCAAATGCGCATCGGGGCAGGCGTGCAGGCGGGCGCTGTCGCCGTCGGCGATGACCGGCGTGCCGTCCTGCAGGCGC < AM260479/330641‑330564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |