New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AM260479 | = 330490 | 16 (0.620) | 4 (0.170) | 4/196 | 1.8 | 26.1% | coding (1408/2553 nt) | nagF | Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC |
? | AM260479 | = 330641 | 8 (0.340) | coding (1559/2553 nt) | nagF | Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC |
GGGTTGCCGCACTGGTGATGGCGCGCGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/330458‑330490 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggccAGCAAATGCGCATCGGGGCAGGCGTGCAGGCGGGCGCTGTCGCCGTCGGCGATGACCGGCGTGCCGTCCTGCAGGCGC < AM260479/330641‑330564 GGGTTGCCGCACTGGTGATGGCGCGCGGCGGCCAGCAAATGCGCATCGGG > 1:581217/1‑50 GGGTTGCCGCACTGGTGATGGCGCGCGGCGGCCAGCAAATGCGCATCGGG < 2:581217/50‑1 ACTGGTGATGGCGCGCGGCGGCCAGCAAATGCGCATCGGGGCAGGCGTGCAGGCGGGCGCTGTCGCCGTCGGCGATGACCGGCGTGCCGTCCTGCAGGCGC < 1:204522/101‑1 ACTGGTGATGGCGCGCGGCGGCCAGCAAATGCGCATCGGGGCAGGCGTGCAGGCGGGCGCTGTCGCCGTCGGCGATGACCGGCGTGCCGTCCTGCAGGCGC > 2:204522/1‑101 GGGTTGCCGCACTGGTGATGGCGCGCGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/330458‑330490 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggccAGCAAATGCGCATCGGGGCAGGCGTGCAGGCGGGCGCTGTCGCCGTCGGCGATGACCGGCGTGCCGTCCTGCAGGCGC < AM260479/330641‑330564 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |