New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 330490	16 (0.620)	4 (0.170)	4/196	1.8	26.1%	coding (1408/2553 nt)	nagF	Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC
	?	AM260479	= 330641	8 (0.340)					coding (1559/2553 nt)	nagF	Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC

TCAGCTCGGCATCCCTTGCCTGGTGGCTCTGGGCAGCGCGCTGGAGCGCCTGCAGGACGGCACGCCGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTGGCCGCCGCCGCCAGCGCCGTCAGGCTGCGCGCGCAGCAGCGCGAGGCCGACCTGCGCGCCGCGCACGCCGCGGCCAGCACCCGCGACGGCGTGCCTATTGAGGT  >  AM260479/330519‑330746                                                                                                                           |                                                                                                          tCAGCTCGGCATCCCTTGCCTGGTGGCTCTGGGCAGCGCGCTGGAGCGCCTGCAGGACGGCACGCCGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTGgccgccgccg                                                                                                <  1:410257/134‑1 (MQ=255)                       gtggCTCTGGGCAGCGCGCTGGAGCGCCTGCAGGACGGCACGCCGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTGGCCGCCGCCGCCAGCGCCGTCAGGCTgcgcgc                                                                          <  1:540453/134‑1 (MQ=255)                                              gcgcCTGCAGGACGGCACGCCGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTggccgccgcgcgccatcaccagt                                                                                    <  1:204522‑M2/101‑24 (MQ=255)                                              gcgcCTGCAGGACGGCACGCCGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTggccgccgcgcgccatcaccagt                                                                                    >  2:204522‑M2/1‑78 (MQ=255)                                                gcCTGCAGGACGGCACGCCGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTGGCCGCCGCCGCCAGCGCCGTCAGGCTGCGCGCGCAGCAGCGCGAGGCCGACCTgcgc                                                 >  1:211789/1‑134 (MQ=255)                                                     cAGGACGGCACGCCGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTGGCCGCCGCCGCCAGCGCCGTCa                                                                                    <  1:699337/94‑1 (MQ=255)                                                     cAGGACGGCACGCCGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTGGCCGCCGCCGCCAGCGCCGTCa                                                                                    >  2:699337/1‑94 (MQ=255)                                                     cAGGACGGCACGCCGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTGGCCGCCGCCGCCAGCGCCGTCAGGCTGCGCGCGCAGCAGCGCGAGGCCGACCTGcgcgccgc                                            >  1:197894/1‑134 (MQ=255)                                                                 ccGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTGGCCGCCGCCGCCAGCGCCGTCAGGCTGCGCGCGCAGCAGCGCGAGGCCGACCTGCGCGCCGCGCACGCCGCGGc                                >  2:115821/1‑134 (MQ=255)                                                                                               cTGCACGCCTGCCCCGATGCGCATTTGCTGGCCGCCGCCGCCAGCGCCGTCAGGCTGCGCGCGCAGCAGCGCGAGGCCGACCTGCGCGCCGCGCACGCCGCGGCCAGCACCCGCGACGGCGTGCCTATTGAGGt  <  1:443295/134‑1 (MQ=255)                                                                                                           cccGATGCGCATTTGCTggccgccgcgcgccatcaccagtgcggcaaccc                                                                          >  1:581217‑M2/1‑17 (MQ=255)                                                                                                           cccGATGCGCATTTGCTggccgccgcgcgccatcaccagtgcggcaaccc                                                                          <  2:581217‑M2/50‑34 (MQ=255)                                                                                                                           |                                                                                                          TCAGCTCGGCATCCCTTGCCTGGTGGCTCTGGGCAGCGCGCTGGAGCGCCTGCAGGACGGCACGCCGGTCATCGCCGACGGCGACAGCGCCCGCCTGCACGCCTGCCCCGATGCGCATTTGCTGGCCGCCGCCGCCAGCGCCGTCAGGCTGCGCGCGCAGCAGCGCGAGGCCGACCTGCGCGCCGCGCACGCCGCGGCCAGCACCCGCGACGGCGTGCCTATTGAGGT  >  AM260479/330519‑330746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.