New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1634137	19 (0.740)	4 (0.160)	4/202	1.9	20.0%	coding (774/1299 nt)	dadA5	D‑amino‑acid dehydrogenase
	?	AM260479	= 1634156	14 (0.580)					coding (755/1299 nt)	dadA5	D‑amino‑acid dehydrogenase

CTTGTAGGACTCATCCATCAGCGCGCCCAGCGGCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/1633999‑1634137 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgACCGCGTGCTGGTCGCGGCCGGCGCCGACAGCACCGCGCTGCTGCGCCCGCTGGGCCTGCGCATGCCGCTGTATCCGGTCAAGGGCTACTCGGTGACGGTGATGGTCCGCGACGAACTGCAGGCGC  <  AM260479/1634156‑1634031                                                                                                                                                                                                                                                                           CTTGTAGGACTCATCCATCAGCGCGCCCAGCGGCGCCTGCAGTTCGTCGCGGTCCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGG                                                                                                                                     >  1:359873/1‑134      AGGACTCATCCATCAGCGCGCCCAGCGGCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCG                                                                                                                                >  2:320805/1‑134                             AGCGGCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGACCGCGTGCTGGTCGCGGCCGGC                                                                                                         <  1:338924/134‑1                                                                                                                     GCAGCGCGGTGCTGTCGGCGCCGACCGCGTGCTGGTCGCG                                                                                                               <  1:390420/40‑1                                                                                                                     GCAGCGCGGTGCTGTCGGCGCCGACCGCGTGCTGGTCGCG                                                                                                               >  2:390420/1‑40                                                                                                                                    CGGCGCCGACCGCGTGCTGGTCGCGGCCGGCGCCGACAGCACCGCGCTGCTGCGCCCGCTGGGCCTGCGCATGCCGCTGTATCCGGTCAAGGGCTACTCGGTGACGGTGATGGTCCGCGACGAACTGCAGGCGC  >  2:743526/1‑134                                                                                                                                                                                                                                                                           CTTGTAGGACTCATCCATCAGCGCGCCCAGCGGCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/1633999‑1634137 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgACCGCGTGCTGGTCGCGGCCGGCGCCGACAGCACCGCGCTGCTGCGCCCGCTGGGCCTGCGCATGCCGCTGTATCCGGTCAAGGGCTACTCGGTGACGGTGATGGTCCGCGACGAACTGCAGGCGC  <  AM260479/1634156‑1634031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.