New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1634137	19 (0.740)	4 (0.160)	4/202	1.9	20.0%	coding (774/1299 nt)	dadA5	D‑amino‑acid dehydrogenase
	?	AM260479	= 1634156	14 (0.580)					coding (755/1299 nt)	dadA5	D‑amino‑acid dehydrogenase

AGGACTCATCCATCAGCGCGCCCAGCGGCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGCCCGCGTTGTCGGGCCTGACGCGCGCCACCCGGGTGTCGAAGCGGAACG  >  AM260479/1634004‑1634267                                                                                                                                      |                                                                                                                                   aGGACTCATCCATCAGCGCGCCCAGCGGCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCG                                                                                                                                    >  2:320805‑M1/1‑134 (MQ=255)     cTCATCCATCAGCGCGCCCAGCGGCGCCTGCAGTTCGTCGCGGTCCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCgccggccg                                                                                                                                <  2:359873/134‑1 (MQ=255)           catcAGCGCGCCCAGCGGCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGAc                                                                                                                            >  1:743526/1‑132 (MQ=255)            atcAGCGCGCCCAGCGGCGCCTGCAGTTAGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAg                                                                                                                         >  2:887210/1‑134 (MQ=255)                  gcgcCCAGCGGCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCAcgcg                                                                                                                   <  1:320805/134‑1 (MQ=255)                        aGCGGCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGaccgcgtgctggtcgcggccggc                                                                                                             <  1:338924‑M1/134‑24 (MQ=255)                            gcgcCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTcggcgccg                                                                                                         >  2:743526‑M2/1‑126 (MQ=255)                                                        cgtcaccgAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCg                                                                              >  1:103534/1‑133 (MQ=255)                                                              cgAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGtgct                                                                       >  2:333175/1‑134 (MQ=255)                                                                aGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCgccggccg                                                                                                                                >  2:449877/1‑75 (MQ=255)                                                                aGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCgccggccg                                                                                                                                <  1:449877/75‑1 (MQ=255)                                                                        ttGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAg                                                                           <  2:533445/120‑1 (MQ=255)                                                                        ttGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAg                                                                           >  1:533445/1‑120 (MQ=255)                                                                               gATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCCCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGc                                                      <  1:887210/134‑1 (MQ=255)                                                                                   cAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGc                                                  <  1:333175/134‑1 (MQ=255)                                                                                    aGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAggg                                                                                          >  1:811255/1‑93 (MQ=255)                                                                                    aGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAggg                                                                                          <  2:811255/93‑1 (MQ=255)                                                                                    aGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGcc                                                 >  2:168157/1‑134 (MQ=255)                                                                                             cgcAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTg                                                   >  1:90261/1‑123 (MQ=255)                                                                                             cgcAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTg                                                   <  2:90261/123‑1 (MQ=255)                                                                                                                gcagcGCGGTGCTGTCGGCGCCGaccgcgtgctggtcgcg                                                                                                                   >  2:390420‑M1/1‑23 (MQ=255)                                                                                                                gcagcGCGGTGCTGTCGGCGCCGaccgcgtgctggtcgcg                                                                                                                   <  1:390420‑M1/40‑18 (MQ=255)                                                                                                                             gTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGtgctgc                                                                     >  2:138586/1‑73 (MQ=255)                                                                                                                             gTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGtgctgc                                                                     <  1:138586/73‑1 (MQ=255)                                                                                                                               cGGCGCCGaccgcgtgctggtcgcggccggcgccgacagcaccgcgctgctgcgcccgctgggcctgcgcatgccgctgtatccggtcaagggctactcggtgacggtgatggtccgcgacgaactgcaggcgc      >  2:743526‑M1/1‑8 (MQ=255)                                                                                                                                   gccggccgCGACCAGCACGCGGTcggcgccgacagcaccgcgctgctgcgcccgctgggcctgcgcatgccgctgtatccggtcaagggctactcggtgacggtgatggtccgcgacgaactgcaggcgccgct  <  1:338924‑M2/134‑112 (MQ=255)                                                                                                                                      |                                                                                                                                   AGGACTCATCCATCAGCGCGCCCAGCGGCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGCCCGCGTTGTCGGGCCTGACGCGCGCCACCCGGGTGTCGAAGCGGAACG  >  AM260479/1634004‑1634267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.