| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 1634137 | 19 (0.740) | 4 (0.160) | 4/202 | 1.9 | 20.0% | coding (774/1299 nt) | dadA5 | D‑amino‑acid dehydrogenase |
| ? | AM260479 | = 1634156 | 14 (0.580) | coding (755/1299 nt) | dadA5 | D‑amino‑acid dehydrogenase | |||||
GCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGCCCGCGTTGTCGGGCCTGACGCGCGCCACCCGGGTGTCGAAGCGGAACGATAC > AM260479/1634031‑1634271 | gcgcCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTcggcgccg > 2:743526‑M2/1‑126 (MQ=255) cgtcaccgAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCg > 1:103534/1‑133 (MQ=255) cgAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGtgct > 2:333175/1‑134 (MQ=255) ttGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAg > 1:533445/1‑120 (MQ=255) ttGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAg < 2:533445/120‑1 (MQ=255) gATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCCCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGc < 1:887210/134‑1 (MQ=255) cAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGc < 1:333175/134‑1 (MQ=255) aGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAggg < 2:811255/93‑1 (MQ=255) aGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAggg > 1:811255/1‑93 (MQ=255) aGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGcc > 2:168157/1‑134 (MQ=255) cgcAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTg < 2:90261/123‑1 (MQ=255) cgcAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTg > 1:90261/1‑123 (MQ=255) gTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGtgctgc > 2:138586/1‑73 (MQ=255) gTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGtgctgc < 1:138586/73‑1 (MQ=255) gccggccgCGACCAGCACGCGGTcggcgccgacagcaccgcgctgctgcgcccgctgggcctgcgcatgccgctgtatccggtcaagggctactcggtgacggtgatggtccgcgacgaactgcaggcgccgct < 1:338924‑M2/134‑112 (MQ=255) gccgCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGCCCGCGTTGTCGGGCCTGACGCGCGCCACCCGGGTGTCGAAGCGGAACGATAc > 2:521078/1‑134 (MQ=255) cgcgACCAGCACGCGGTcggcgccgacagcaccgcgctgc > 2:390420‑M2/1‑17 (MQ=255) cgcgACCAGCACGCGGTcggcgccgacagcaccgcgctgc < 1:390420‑M2/40‑24 (MQ=255) | GCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGCCCGCGTTGTCGGGCCTGACGCGCGCCACCCGGGTGTCGAAGCGGAACGATAC > AM260479/1634031‑1634271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |