New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 163413719 (0.740)4 (0.160) 4/202 1.9 20.0% coding (774/1299 nt) dadA5 D‑amino‑acid dehydrogenase
?AM260479 = 1634156 14 (0.580)coding (755/1299 nt) dadA5 D‑amino‑acid dehydrogenase

GCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGCCCGCGTTGTCGGGCCTGACGCGCGCCACCCGGGTGTCGAAGCGGAACGATAC  >  AM260479/1634031‑1634271
                                                                                                                             |                                                                                                                   
gcgcCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTcggcgccg                                                                                                             >  2:743526‑M2/1‑126 (MQ=255)
                            cgtcaccgAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCg                                                                                  >  1:103534/1‑133 (MQ=255)
                                  cgAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGtgct                                                                           >  2:333175/1‑134 (MQ=255)
                                            ttGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAg                                                                               >  1:533445/1‑120 (MQ=255)
                                            ttGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAg                                                                               <  2:533445/120‑1 (MQ=255)
                                                   gATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCCCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGc                                                          <  1:887210/134‑1 (MQ=255)
                                                       cAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGc                                                      <  1:333175/134‑1 (MQ=255)
                                                        aGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAggg                                                                                              <  2:811255/93‑1 (MQ=255)
                                                        aGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAggg                                                                                              >  1:811255/1‑93 (MQ=255)
                                                        aGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGcc                                                     >  2:168157/1‑134 (MQ=255)
                                                                 cgcAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTg                                                       <  2:90261/123‑1 (MQ=255)
                                                                 cgcAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTg                                                       >  1:90261/1‑123 (MQ=255)
                                                                                                 gTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGtgctgc                                                                         >  2:138586/1‑73 (MQ=255)
                                                                                                 gTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGtgctgc                                                                         <  1:138586/73‑1 (MQ=255)
                                                                                                       gccggccgCGACCAGCACGCGGTcggcgccgacagcaccgcgctgctgcgcccgctgggcctgcgcatgccgctgtatccggtcaagggctactcggtgacggtgatggtccgcgacgaactgcaggcgccgct      <  1:338924‑M2/134‑112 (MQ=255)
                                                                                                           gccgCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGCCCGCGTTGTCGGGCCTGACGCGCGCCACCCGGGTGTCGAAGCGGAACGATAc  >  2:521078/1‑134 (MQ=255)
                                                                                                             cgcgACCAGCACGCGGTcggcgccgacagcaccgcgctgc                                                                                              >  2:390420‑M2/1‑17 (MQ=255)
                                                                                                             cgcgACCAGCACGCGGTcggcgccgacagcaccgcgctgc                                                                                              <  1:390420‑M2/40‑24 (MQ=255)
                                                                                                                             |                                                                                                                   
GCGCCTGCAGTTCGTCGCGGACCATCACCGTCACCGAGTAGCCCTTGACCGGATACAGCGGCATGCGCAGGCCCAGCGGGCGCAGCAGCGCGGTGCTGTCGGCGCCGGCCGCGACCAGCACGCGGTCGGCGCTCAGCACCTGGCCAGGGCGCTTCTTGTCGGAGTGCTGCAGCTCGACCTGCAGCTTGCCCGCGTTGTCGGGCCTGACGCGCGCCACCCGGGTGTCGAAGCGGAACGATAC  >  AM260479/1634031‑1634271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.