| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 1931359 | 29 (1.120) | 5 (0.220) | 4/190 | 1.8 | 20.1% | coding (168/1491 nt) | acrC4 | Cation/multidrug efflux system outer membrane porin |
| ? | AM260479 | = 1931484 | 14 (0.610) | coding (293/1491 nt) | acrC4 | Cation/multidrug efflux system outer membrane porin | |||||
TGCGACGAAGCGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/1931221‑1931359‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgcggccAGCTCCTGGTTGTGAACGTTGGCTGCATCGATCAGCCGGTCCAGATCGGCATCACCAAACAGCTTCCACCACTCACCGCGCTGCTGGCCTTCGTCCGGCGTGGCGGTCTTCCATTGCGCGCTCT < AM260479/1931484‑1931361 TGCGACGAAGCGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCG > 1:97138/1‑134TGCGACGAAGCGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCG > 2:46052/1‑134 GCGACGAAGCGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGC > 1:189278/1‑134 GCGACGAAGCGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGC > 1:541559/1‑134 GCGACGAAGCGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGC > 2:162650/1‑134 GCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCAGCTCCTGGTTGTGAACGTTGGCTGCATCGAT < 2:189278/134‑1 GCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCAGCTCCTGGTTGTGAACGTTGGCTGCATCGAT < 2:541559/134‑1 AGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCAGCTCCTGGTTGTGAACGTTGGCTGCATCGATCAGCCGGTCCAGATCGGCATCACCAAACAGCTTCCACCACTCACCGCGCTGCTGG > 1:46052/1‑134 CTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCAGCTCCTGGTTGTGAACGTTGGCTGCATCGATCAGCCGGTCCAGATCGGCATCAC > 1:191097/1‑89 CTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCAGCTCCTGGTTGTGAACGTTGGCTGCATCGATCAGCCGGTCCAGATCGGCATCAC < 2:191097/89‑1 GCCGCCGCGGCCAGCTCCTGGTTGTGAACGTTGGCTGCATCGATCAGCCGGTCCAGATCGGCATCACCAAACAGCTTCCACCACTCACCGCGCTGCTGGCCTTCGTCCGGCGTGGCGGTCTTCCAT > 1:834406/1‑126 GCCGCCGCGGCCAGCTCCTGGTTGTGAACGTTGGCTGCATCGATCAGCCGGTCCAGATCGGCATCACCAAACAGCTTCCACCACTCACCGCGCTGCTGGCCTTCGTCCGGCGTGGCGGTCTTCCAT < 2:834406/126‑1 CGCCGCGGCCAGCTCCTGGTTGTGAACGTTGGCTGCATCGATCAGCCGGTCCAGATCGGCATCACCAAACAGCTTCCACCACTCACCGCGCTGCTGGCCTTCGTCCGGCGTGGCGGTCTTCCATTGCGCGCTCT > 2:961699/1‑134 CGCCGCGGCCAGCTCCTGGTTGTGAACGTTGGCTGCATCGATCAGCCGGTCCAGATCGGCATCACCA < 1:413488/67‑1 CGCCGCGGCCAGCTCCTGGTTGTGAACGTTGGCTGCATCGATCAGCCGGTCCAGATCGGCATCACCA > 2:413488/1‑67 TGCGACGAAGCGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/1931221‑1931359‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgcggccAGCTCCTGGTTGTGAACGTTGGCTGCATCGATCAGCCGGTCCAGATCGGCATCACCAAACAGCTTCCACCACTCACCGCGCTGCTGGCCTTCGTCCGGCGTGGCGGTCTTCCATTGCGCGCTCT < AM260479/1931484‑1931361 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |