New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1931359	29 (1.120)	5 (0.220)	4/190	1.8	20.1%	coding (168/1491 nt)	acrC4	Cation/multidrug efflux system outer membrane porin
	?	AM260479	= 1931484	14 (0.610)					coding (293/1491 nt)	acrC4	Cation/multidrug efflux system outer membrane porin

AGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAGGCGGCGCGGTATCCGCAACTGAGCGTGGGCCTGGACCCGACTCGCTCGCAGCCGTCGGCCGCCTCGCAGGGGCTGCC  >  AM260479/1931361‑1931616                                                                                                                            |                                                                                                                                     agagCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTggccgcggcg                                                                                                                            >  2:961699‑M2/1‑124 (MQ=255)           aTGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTggccgcggcggc                                                                                                                          <  2:834406‑M2/126‑13 (MQ=255)           aTGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTggccgcggcggc                                                                                                                          >  1:834406‑M2/1‑114 (MQ=255)            tGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCt                                                                                                                 <  1:389054/134‑1 (MQ=255)                                      ccAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTggccgcggcggcctcggcttccttgaacgtggaggcactgggtgtct                                                                                       >  1:46052‑M2/1‑87 (MQ=255)                                                ggTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAggc                                                                             <  2:829923/134‑1 (MQ=255)                                                                    tGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTggccgcggcg                                                                                                                            <  1:413488‑M2/67‑11 (MQ=255)                                                                    tGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTggccgcggcg                                                                                                                            >  2:413488‑M2/1‑57 (MQ=255)                                                                      gTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTggccgcggcggcctcggcttccttgaacgtggag                                                                                                    >  1:191097‑M2/1‑55 (MQ=255)                                                                      gTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTggccgcggcggcctcggcttccttgaacgtggag                                                                                                    <  2:191097‑M2/89‑35 (MQ=255)                                                                      gTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAggc                                                                             >  1:741485/1‑112 (MQ=255)                                                                      gTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAggc                                                                             <  2:741485/112‑1 (MQ=255)                                                                      gTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAGGCGGCGCGGTATCCGCAACTGAg                                                        <  1:439948/133‑1 (MQ=255)                                                                      gTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAGGCGGCGCGGTATCCGCAACTGAGc                                                       >  2:767132/1‑134 (MQ=255)                                                                             cGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAGGCGGCGCGGTATCCGCAACTGAGCGTGGGcc                                                >  1:776079/1‑134 (MQ=255)                                                                              gATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAGGCGGCGCGGTATCCGCAACTGAGCGTGGGCCt                                               >  2:691116/1‑134 (MQ=255)                                                                                tCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAGGCGGCGCGGTATCCGCAACTGAGCGTGGGCCTg                                              >  1:763349/1‑133 (MQ=255)                                                                                             aTCGATGCAGCCAACGTTCACAACCAGGAGCTggccgcggcggcctcggcttccttgaacgtggaggcactgggtgtctccggcaccttgtaggtcggcgccagcgagcagccggccaggagcagcgcggccgc                                <  2:541559‑M2/134‑103 (MQ=255)                                                                                             aTCGATGCAGCCAACGTTCACAACCAGGAGCTggccgcggcggcctcggcttccttgaacgtggaggcactgggtgtctccggcaccttgtaggtcggcgccagcgagcagccggccaggagcagcgcggccgc                                <  2:189278‑M2/134‑103 (MQ=255)                                                                                                     aGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAGGCGGCGCGGTATCCGCAACTGAGCGTGGGCCTGGACCCGACTCGCTCGCAGCCGt                        <  2:763349/134‑1 (MQ=255)                                                                                                               cacaACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAGGCGGCGCGGTATCCGCAACTGAGCGTGGGCCTGGACCCGACTCGCTCGCAGCCGTCGGCCGCCt               <  1:691116/133‑1 (MQ=255)                                                                                                                   aCCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCAcc                                                                                  <  1:923966/62‑1 (MQ=255)                                                                                                                   aCCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCAcc                                                                                  >  2:923966/1‑62 (MQ=255)                                                                                                                           cTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAGGCGGCGCGGTATCCGCAACTGAGCGTGGGCCTGGACCCGACTCGCTCGCAGCCGTCGGCCGCCTCGCAGGGGCTGcc  >  2:697359/1‑134 (MQ=255)                                                                                                                            |                                                                                                                                     AGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGCTGGCCGCGGCGGCGGCGCGCCTGAAGCAGGCGCGTGCGTTCACCGGCGCCACCGAGGCGGCGCGGTATCCGCAACTGAGCGTGGGCCTGGACCCGACTCGCTCGCAGCCGTCGGCCGCCTCGCAGGGGCTGCC  >  AM260479/1931361‑1931616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.