| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 1931359 | 29 (1.120) | 5 (0.220) | 4/190 | 1.8 | 20.1% | coding (168/1491 nt) | acrC4 | Cation/multidrug efflux system outer membrane porin |
| ? | AM260479 | = 1931484 | 14 (0.610) | coding (293/1491 nt) | acrC4 | Cation/multidrug efflux system outer membrane porin | |||||
AGCGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGC > AM260479/1931229‑1931483 | aGCGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCgag < 2:799683/134‑1 (MQ=255) cGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGagag < 2:97138/134‑1 (MQ=255) cGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGagag < 2:752651/134‑1 (MQ=255) gcggcCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCagctcctggttgtgaacgttggctgcatcgat < 2:189278‑M1/134‑33 (MQ=255) gcggcCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCagctcctggttgtgaacgttggctgcatcgat < 2:541559‑M1/134‑33 (MQ=255) ctgctCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGc > 1:1018858/1‑132 (MQ=255) cTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAgcg < 2:874572/134‑1 (MQ=255) ctCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAgtggt > 1:61011/1‑134 (MQ=255) tCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCCCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGCCCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAgtggtg > 1:692402/1‑134 (MQ=255) ccTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGt < 2:1018858/134‑1 (MQ=255) agaCACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGTGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAgtgg < 1:150191/104‑1 (MQ=255) agaCACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGTGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAgtgg > 2:150191/1‑104 (MQ=255) agaCACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCagctcctggttgtgaacgttggctgcatcgatcagccggtccagatcggcatcaccaaacagcttccaccactcaccgcgctgctgg > 1:46052‑M1/1‑47 (MQ=255) agaCACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAgtgg < 1:639663/104‑1 (MQ=255) agaCACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAgtgg > 2:639663/1‑104 (MQ=255) agaCACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGAc > 1:156086/1‑134 (MQ=255) aGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGt > 1:135156/1‑106 (MQ=255) aGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGt < 2:135156/106‑1 (MQ=255) aGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGAt < 2:61011/134‑1 (MQ=255) cTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCagctcctggttgtgaacgttggctgcatcgatcagccggtccagatcggcatcac > 1:191097‑M1/1‑34 (MQ=255) cTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCagctcctggttgtgaacgttggctgcatcgatcagccggtccagatcggcatcac < 2:191097‑M1/89‑56 (MQ=255) cGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGc > 2:389054/1‑133 (MQ=255) aGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGc > 2:990046/1‑51 (MQ=255) aGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGc < 1:990046/51‑1 (MQ=255) aGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGtt > 2:439948/1‑134 (MQ=255) aaGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTcac < 2:156086/134‑1 (MQ=255) aGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGc < 2:97588/110‑1 (MQ=255) aGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGc > 1:97588/1‑110 (MQ=255) gCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACaa < 1:162650/134‑1 (MQ=255) ggCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAg > 1:829923/1‑133 (MQ=255) gccgccGCGGCCagctcctggttgtgaacgttggctgcatcgatcagccggtccagatcggcatcaccaaacagcttccaccactcaccgcgctgctggccttcgtccggcgtggcggtcttccat > 1:834406‑M1/1‑12 (MQ=255) gccgccGCGGCCagctcctggttgtgaacgttggctgcatcgatcagccggtccagatcggcatcaccaaacagcttccaccactcaccgcgctgctggccttcgtccggcgtggcggtcttccat < 2:834406‑M1/126‑115 (MQ=255) cgccgcGGCCagctcctggttgtgaacgttggctgcatcgatcagccggtccagatcggcatcaccaaacagcttccaccactcaccgcgctgctggccttcgtccggcgtggcggtcttccattgcgcgctct > 2:961699‑M1/1‑10 (MQ=255) cgccgcGGCCagctcctggttgtgaacgttggctgcatcgatcagccggtccagatcggcatcacca > 2:413488‑M1/1‑10 (MQ=255) cgccgcGGCCagctcctggttgtgaacgttggctgcatcgatcagccggtccagatcggcatcacca < 1:413488‑M1/67‑58 (MQ=255) gcgGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACg > 2:30750/1‑115 (MQ=255) gcgGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACg < 1:30750/115‑1 (MQ=255) gCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAgtgg < 1:787314/60‑1 (MQ=255) gCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAgtgg > 2:787314/1‑60 (MQ=255) | AGCGGAACGTGCCAAGGCTTGCGGCCATGGCGGCCGCGCTGCTCCTGGCCGGCTGCTCGCTGGCGCCGACCTACAAGGTGCCGGAGACACCCAGTGCCTCCACGTTCAAGGAAGCCGAGGCCGCCGCGGCCGAGAGCGCGCAATGGAAGACCGCCACGCCGGACGAAGGCCAGCAGCGCGGTGAGTGGTGGAAGCTGTTTGGTGATGCCGATCTGGACCGGCTGATCGATGCAGCCAACGTTCACAACCAGGAGC > AM260479/1931229‑1931483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |